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Mouse element [ mm2056 ]


Position: chr13:14,904,440-14,909,580 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAACCTCCTTGGTTAGTGTTggtatttcagtatcaccttccctgggtctgtatcagacag
gattttgtctagctagagtcttcgaagctttggtccatgctgtcaaatttgtgtggtcat
ctatcctgttatgtctagaaaatactgttctatatatttttgagtacctctggcttttct
aatctttctgttcccccttccattacaatcctgaagtctagtggagaagggcgggatata
aacatcaagtttggggtgagcatgccacatgattttactctttgcatgttgaccagttgg
agtccccttctactgaaaagggagcttctctgctaagagttgagagatggtctactgtat
gagtatagtagtaaaccattaggagttattttaatactatgttcgtttagcagaataata
ttgaattcttccctcaggtatatgatctaccaggtcacagcttcttgggccttttaacag
tgccaggtatgtattccatctcatggatttggccttagatacaatcataaagtagttgaa
tatgtccataatattcatcccactactacaccagtagatacatcaggccaagcctgtatg
gtggcttgcagcgctcacagctggttgagactgcagttacatttcttcagtaggaatgtg
aatagaacttttcagcaccatgaacactagccagtaagaatgaagcttcctgatgagtac
cagcttgatatctccatgttttatgactcaagtgtgtgttgtcttcagctaactatatgt
actggtgataatatataatgtttgcaggtctatgtaacctccattggctaacaacacaaa
aagagatagcttattttttttatttaagttttattgcattatgctgagaaaagatacata
atttcaatttacctgaatttgttaacatttaaaaacatatttttagtaaatagatttaca
ccacattcttctttttcttttgtaccgcaactcttcccagagacccctttcaatacctgc
catatcttttgtatttatcatattctttaaaacttataaactattataacaataaaaatg
agtactataaaagttgtttgatataaaacaatcaattgaacagtcttatgtagatgcttg
tctacagcaacactgaaaatacatatgtttttctcaatataaattttaaataactccaaa
tatattagcttatactattttaaataatatatcactattatttttctaagtgaacataaa
tagataaagtctttttgtgtgtttgtttgttttgttttgttttgtttttagtagggctta
aatcttggctcttactatcttacaaaatcaaaataagaacaatttttggacattggagtt
cattgtaataaagctgtacttcaatgtccctcacatcaccaaagatttttacctccatag
tagctaagctaagagttgacagttctgctgcgccaaggaatgagttgtaggcaacatttt
ttgatacagatttccaggtatggtcaaagctatttgacttgagtgattgtcttcattctc
agcccacatttgtttaagaaatggttgtgagtattgagatggtctatccataaagtcatt
catcaactatttcaatgaagaatggttctgcttggagggtggcacagacatttggtgagg
gtaagattctggttccttagctgtgatgattttgaaaatcattcatctcagaataagagt
aacttacaaagttctcttcttcaaaattgctacaatcattataaatatcaagcaaagcat
tcagtctcactctttgctcttctcttacaaggcacctcccaagttaattgtctacatttc
ttttggctgggtgaataattttgaaatatgtaggctgttctgaaaaccatagtatagtat
aaaaacatcaaatatacaatccttctaataaaggctgagataggagttcaagaccattat
gtggcagacagcaagacactgtcatgtaccaacaagcagaaagtgtgtggattgtacaat
actggacctatttctccaattaccaaattagagagcacactggatgacagccaacaaact
ttaattcctcatattttttaatttcaatcaactaggatatgttggtaatattaattttca
tattaagatatattaaggaaaagtgattgttacttcctgttatttttattgttaaaggtg
gaattatgttcgtgtgggtttgttgaaagattactttcttgcttattttagggtatagat
tcactccttgtgttggtattttccatctattatcctttgtagagctggatttgtggaaag
atattgtgtaaatttggttttgtcatggaatatcttgttttctctgtctatggtaattga
gagttttgttgggtatagtagcctgggctggcattttcattctactagggtctgtatgac
atctactcaggatcttctagctttcattgtctctggtgagaagtctgatgtaattctgat
aggtctgcctttatatgttacttgacatttttcccttactgcttttaatattctttcctt
gtttagtgcatttggtgttttgattattatgtgacaggaggaatttcttttctggtacag
tctatttggagttctgtaagcttcttgtatgttcatgggcatctttttcttcaggttagg
gaagttttcttctataattttgttgaagatatttactggccctttaagttgagaatcttt
gctctcttctatatctattatccttatgtttggtcttcttattgtgacttgaatttcctg
gatgttttgggttaggagcttttttctttttgtattttctctcactgttgtatcaatgtt
ttctatggtatcttctgcatctgatagactctcttctatttattatattctgttggtgat
tcttacatctttgactcctgatctctttcctaagttttctaactccagggttgtctccct
ttgtgatttctttattgttttctagttccatttttagatcctggatgttttttttttttc
cttttcttcacttgttcgattgtgttttcctgtaattctttaagggatttttgtgtttcc
tctttaagggtttctagctgtttacctgtgttcttctgtgtttttttaagggagttattt
atgtccttcttaaagtcctctatcatcatcatgagcagtgatttttagatctgaatcttg
cttttccggtgtgttgaggtatccaggacttgcgatggtgggtgaattgggttctgatga
tgccaggtaaccttggtgtctgttgcttagattctgatgctttcctcccgccatcgggtt
atctgtagtgctaccttcccaggctatgtctgactggagcccatctttcctgtggtcttg
gttgtgtaagaacccctcagacttcagctgtctctgtgatcctgtgattcttggatcctg
tgatcctgagatcctgagatcctggatgtgtccgagctcctgggagtcaagctgcctctg
gtaccctgagatcctggtgtgatcaaggtcctgtgatcccatgatcctatgatcctaggc
atgttagactgcctgggagtggagcagcctttgggggttgtggggctggctgcagagggc
aggctgtagaacttgcgcccaaggtctgctccagggacaggtccagacagaagatgggaa
ggaaccctagtcactggtctagcagagttcctgcatgcctaggtcgcactggcccgagat
agcttattcttgatactggtctttttatttgctagaattaccatgtctaattggagtttt
gtacccccattatagggcaattctatgaaatctttgtgtgtgtgtgtgtgtgtgtattat
gaagcttctatagtagtaggtttctatatggcgttttcaaaatgcctttcgtgttagtta
tccttaatgatatttcctcctctagactgtcttcccatctccatgcagagatttaattct
cttgtttcattgtttccctttaaccctttatatccctgtgttccatttcttctctctttt
aggcctctcccctctatgagcctttatcaaatttctgatatctgtggatattccaaatgg
aatgtgaagattcaaagctaaagtctaaaaatgagagaaaatatgggtcatttatcattc
tgtatctgggtaattttcttaagatgactgtttccagctctattaattaacgtgtagatt
tcatttgttaaatagctgaacaacattccattgtgcacatgtatcattttccaattcatt
ttaaaattgattatcagttcatggacatttgggctatttcctttttttttttttttttgc
ctgttcccaagagtagtatagatggatcatatggtattttcactttcattagttttcaga
aaccttcacacatatttccatagttgttgtgcccatagtttgtgtccccaccagaataaa
tgttccctttctcccacatatattccagtgtctgcttaaaatatcaaagtagttttaatt
tgcaatttattgatgattaaagatgttgaacatttaaaatgtatatatctaccattggta
tttcttcttttgagaagtctctacttagatctagatgtatttttacattaaattgtttgt
tttcttgatgtttagttttttgaattctttgtatattctttgtgtcagatgtacatctgg
taaatgaccctttctccatgctgtagactctcccaactcaaatgatactgtctttgatgt
gtagaaattttttattttcatgagatcttatttatttcttgcatgtgctatcagtgacct
attcagaaagttctttcctgtgacaaaaagttcaagctttctctctactttctcctctat
caaactcaggtatcaggtcttatttccaggtcactgatatatttggagttgacttttgtg
tagagtgggagatgagaatatagttttattcttttttatgtactcatccagtttaaacag
ctatttgttgaagatactgctttttcttcattgtgccttttttgcttctttgtcaaaaat
tgggaggttgtaagtatgtacAATTACAGTTGGGTCCTCCA
Primer
(+)GAACCTCCTTGGTTAGTGTT
(+)TGGAGGACCCAACTGTAATT


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