Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2055 ]


Position: chr13:14,909,180-14,914,418 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TAAATGACCCTTTCTCCATGctgtagactctcccaactcaaatgatactgtctttgatgt
gtagaaattttttattttcatgagatcttatttatttcttgcatgtgctatcagtgacct
attcagaaagttctttcctgtgacaaaaagttcaagctttctctctactttctcctctat
caaactcaggtatcaggtcttatttccaggtcactgatatatttggagttgacttttgtg
tagagtgggagatgagaatatagttttattcttttttatgtactcatccagtttaaacag
ctatttgttgaagatactgctttttcttcattgtgccttttttgcttctttgtcaaaaat
tgggaggttgtaagtatgtacaattacagttgggtcctccattttattttactgataaat
aaatctgttttaatgccagtgcctttttgtttttatgactatggccataactcttttgac
atatgtcacatcttctcttagctaccagtttattgaaatataaactatccatgctaggat
aaagaaaaagctgaggctctggttccagccagaggtagagcttatccaaagaaaatattt
aaaaccatcctataggaaagactagagctgggacaatcaagatgggtagggccatatctt
gacagaattgctttctcaagcataatatctctacttctacatttaaaactaaacttaagt
ctgggaatagagcttggccgtagagtgtttgcaaagcacatgaaggtgtcagttcacgtc
ctagcaaaaaaaaaaaaaaaaaaaaaaagccaatttttctaatgcccagaaaatagacat
gggagatagtcactgagcctttttcaccattctttctatggctatgttgaataaatatca
tttttattatttactatttgggtgtgaatctagcttgctagggctgtcatactctgatgt
tataattctagcaacaaggttggtattatacaggactatcctctaggacaaactgttatc
atcctcacaagtttagctggacttggtcacaaaatctcacaacagctggatttattgatg
tttggtgtttcctcttgggaggaaatgtggggaaggtcatgggatcttcctctatctctt
gcaatcactttccccactcattgtatgagttgcattgtataagtaggtctgtgctcttcc
ggtctctgaagtgctagagtgcaaagtctaaaaggactaggaaaggaaactctgtctaca
cagccatgaggagttatcatttctgctgggtgtaccttattgtaatttcatacacattgc
actgttagaaagtctaataaatacattggctctcagagtaaactggtggtattgcacctt
ggtttgtcattggatctattagaggaggtgtagacattttaaaacattttaagtcccaca
aagaaagggaggggattttagtagatggagtgcaaggatcatggtaaactagcagcatat
aaaaccgggagagtcatagggacttccacaggcaaccatgatggtggtggtgttcatgta
ggaagccattatattctccacaacaatgcttcctctgtgactaaagaccactgttcaatc
acaactggacacatagtttcattgagacgtgtaagtttggcaagtgttttagtttgacca
agggctgggatgcttaaagatccaacttagatgttgaatcctgatatggaaaacaaaaaa
cggttggtcagaattaccccctagaagtcattggcaacaactgacattctcaagaaactt
ataaactcatccatcaaatatgagggatatttgtgcaaataaatttttttttcttgatgt
cctcaacctttgtagtggtcactatcatctcagacactgagataacgggcagggccatga
gattcagcatcataaaatacaggatggctcttaaaaaaactgtaaatctgcatttctcct
gtttctacttttttctctcaggaacatttgtgaatcagattttgtcatttgactcatttg
ttacctatttttacatgactgacctcaaaccaaaagccttttgtgattcaaatgaaagca
gctggtcaatgacatgaaggtctgcagggaaatatctgctccagtttcctttctgttgct
gtgataaaaccctttgaccaaaaagcagattgtggagtaaagggtttatttggtttgcac
ttccagttcatagtccaccatggaggggagtcaaagcaggatcaaggtgtagcaaatgga
gggatactgcttattggttttctctaggtcattcagcacagatgtatcctcagactgaaa
ttactagattatcacttatttttaggtaattctagactgtttcaagttgacagttaatgt
aaactaggacaatgttcttccattgtctgctctctgttggaaaaaacccaccctttttaa
tcttagaaaagtaacaggctagcatgaaaatgataaaaatcttcaggaggaaactatgtg
ggatgtaggcaaagctatcttcagattaatcaggtgctcagcagagacttggatagcctg
ccagccagtgagtgagaagaagattacacagtaagtttagaggagttgaaggatttgaag
aacacaatgtgcactctctatagatgctgctcctagggcagtgggctcatttctctaagg
aatgtaggattcctctgatggtttactggatagaagagaaaggagtcactcacccccatc
ttaaggaatatgggctatttgtctggttctgctaaacttgtcagccccatttccatgtct
gagctgcaaagctagttttcaggagaaacattttctttcattgttcctgtcagaaactga
ccaacagtgtctttgcatatctttttcaccctggttttaacatctaatggttgtggtctt
ttaagaatcatttgagtcttcgttgtggctttttgtacctttttataatttaataagctt
gtgcttattcttcaaacatggaatgcctcccaacttccagaaattaaatattttttgaga
caaggtgtgtgtacctttagctgtcctggaatttgctctgtggaccagattggcctcaaa
ctcatagatctgcctgtctgtgcctcccaggtgctgggattaaaggtacatgccacagcc
actcagtttgaaattaaatttttctattcatatttccagagataatttaggtactctacc
accagaaaacacttaagtctaagaaaatgtcatccctaagctttacctgtctgttagcga
atatctgaaacatccttcagtacatagaaaagcatgtgcagtcctaattctagcccctgg
aagggtttataagagtctcttatgtctaatgatcacattcttggatcattttggaaattt
gctttggagccctttcattcagaatttcacatagagttaattgtgtaccgtgcacattgg
agtgacactttccatatatgcagtgaagtaaaaggtgcctttgataactctgtggaatag
attatggatggccaaatgtaagagacatccaactcttatcatggaaagtatccatgaacc
ttttatgacagaacttaattttcttaggacaacagatgagtatgtggactttgtttatta
gacattaatttaaatggcccaggatcttgagacccagtgatccaattattgataaacaaa
atttatctatggccagtgaagtagaccacattccatggttagatttttgatgttttaaac
ccccaatgtgcaaaattgttgagtacaaagttcatgattactagtcagaaaactctaagc
cttagacccaaatgaacactctgaccagagaagctcttaaactcatctcagactgtataa
acaacccagttttcagataaggacagataaaatatctccgaatattttaatcatctatta
atctcaccagttcttaaaacatgacaaaaaaattcttctctctggcctgtgtaataaaag
catcactaacagtatagaaggagcatagtgagaagccaactccctgctacttctgtagca
gagacaatcttttatatcagacagatttctaacagacctgctcacctccagtttgtttgg
gatttcatgacagcaaccacaggatttcatggcttgcaaacacaggatccagtttgacaa
aatccattctttaagagaaccagttcgttcctttccagagcccatccctactggggacat
ctgcacttcagggatgttttcctctgtttcagggatgctttttctccatgtgaatcttgc
tatttattatcaagccccatgtgagatcacaaccagaaaaataagactgaaaatttcacc
tgactctttaataagaaagtactacaccttcactgttggtccagactgtcagctttaata
actttgctgttgttattctgtccaccataatttcttttacttgaaggtcttatgaaaaaa
atcatttattgttagttaaataaataggcactaaacttatttttattcaaaattttactt
tttgagaatttaatatatgagtactacatttaatcatttcaccactacttctctcccctc
cacctcttcccatgtcctctttactccatcatcctttcaaattcattatcatttcttcat
tgatttttattgatttatgtatacacacacagacacacatactatatatatatataaacc
tactgagttcatttagtgtaactcatatagacatatgttaagggttgactacatggaatt
ggataacctatcaggtagcaatatagtggagaaaactatcttttcccctctccacagcta
tttgtctgtagttctccattgtgtggccgtgaaaaatttcccccattcccgttgatagtt
catctggcattgtaattatgctgctcttgtgttaactgaccatgttcttgacatttcata
ggtgcagcttccttttcatgtctagaagatactatctcaaaaattgtcctagtcctgtgg
ctcctacaatttctttaagcatctctcctgagatatcccctgagccttgagtataaggca
ttgcattgtagatgtatcagttggagtcaggtatccatcctacagtcacttagttttgca
tttcttccagttgtagatttctgaaatagtctctttctgctgcaaagagaagattctttG
ATGAGGCTTGAGAGCTACA
Primer
(+)TAAATGACCCTTTCTCCATG
(+)TGTAGCTCTCAAGCCTCATC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.