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Mouse element [ mm2054 ]


Position: chr13:14,914,211-14,919,625 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTCCTGTGGCTCCTACAATTtctttaagcatctctcctgagatatcccctgagccttgag
tataaggcattgcattgtagatgtatcagttggagtcaggtatccatcctacagtcactt
agttttgcatttcttccagttgtagatttctgaaatagtctctttctgctgcaaagagaa
gattctttgatgaggcttgagagctacatctatttatggtttataaaatggcagttgtag
atgccatttagggtatatgacttgtccagccatggatattagataagtttatagaaccag
gcttgaatgttctgctattaattaggatgtgagtctattcattatctccagatgacagtg
ttgggttgtaaatgtatagagactcctaggaatagttctaataagtagagataccaccaa
tgatgtactgaatgaaagtttggggatcaaacattctctctaacagatatttgaggatgg
caagtttggttgtcattgggcaggatgggcacttacaaggaatgcagaatgtgtgggatg
gcagctatggctacacatgacacagtaacaaccttcaccagtctgaatgggtgcccatga
aataatcgtaggtaggggattggctcacagacattttctttgcctataggtgcaagctgt
tgaaggaaactgcgaggcagccagaaatgttccaaatggggagaaaacagcactctttgc
tgttctgaagtttcttgcaatcataaggacaatattctagcctggccttctatagtcaaa
tagtacatctttgagaaggttcaaatctgttcaaatagtccaaacaagtagaagagcata
gagctttactatctaggaaagtcatgatgagttaaatataagtgtttgctcaaccattac
actcttcaaagaaacaattgacagcaattctttttcatatcattggcaatgggaggattt
tattttatttatttatttatttttctgttttgtaattctgtctttaatgtttagatctca
tctattccgagttaggttttacataaggtagggggtagggaatcctcctttcaagtccct
gttcaggcgccaaaatgttgcggccgccagcagctcgcaacatgaacggttcaactgaga
aggctactcaagctgtaagagaggaatctagacggggcgaaagaagaaacagagctaaga
caaattcattctgatcaaagctcaaattttattgttgcgacactagttataaaggaaggg
ggaggggacccgattcccgccgaataatctctggtccagtagaaaggtgcacgtgtgtgg
atccgcaggttctagcagtgggcatggcagaacgaatgagcaggaagctccacccctgag
caagcaggtttcaggctgggggaggggagactacattctaatacatattattttgacact
atagtttcttcactgaaattactccaatatatgtgaaaaaccagttagctttatgagtat
atttgttttagactctagtctactgatctatgtccctgatcagcatatggtcttaattac
tgacttctatgcagagtctttattttttttctattttttttattacgtattttcctcaat
tacatttccaatgctagcccaaaagtacttcatgccctacccccccactcccctacccac
ccattcctactttttggccctggtgttcccctgtactggggcatataaagtttctgtgtc
caatgggcctctctttccagtgatggccgactaggccatcttttgatacatatgcagcta
gagtcaagagctccagggtactggttagttcataatgttgttgcacctacagggttgcag
atctatttagctccttggatactttctctagctcctccattgggggccctgtgatccatc
caatagctgactgtgagcatccacttctgtgtttgctaggccccggcctagtctcacaag
agacagctaaatcagggtcctttcagcaaatgcttgctagtgtatgcaatggtgtcattg
tttggaggctaattatgggatggatccctggacatggtaatctatagatggtccatcctt
ttgtctcagctccaaactttgtctctgtaactccttccatgggtgattgtttccaattct
aaggggcaaagtgtccacactttggtcttcgctcttcttcagtttcatgtgttttgtaaa
ttgtatcttatatcttgggtatactaagtttctgggctaatatccacttgtcagtgagta
aatatcatttgagttcttttgtgattgggttacctcactcaggatgatgccctccaggtc
cacccatttggctaggaatttcgtaaattcatttttttaaatagctgagtagtattccat
tgtgtaaatgtaccacattttttgtatccattcctctgttgaggggcatctgggttcttt
ccagcttctgcctattataaataaggctgctatgaacatagtggagcatgtgtcctactt
acaggttgggacatcttctggatatatgcccaggagaggtattggggatcctccggtagt
actatatccaattttctgaggaaccaccagactgatttccagagtggttgtacaagcttg
caatcccaccaacaatggaggagtgttcctatttctccacatcctcgccaacatctgctg
tcacatgaatttttgatcctagccattctgactggtgtgaggtggaatctggaggttgtt
ttgatttgcatttctctgataattaaggatgttgaacattttttcaggtgcttctcagcc
attcagtattcctcaggggagaattcttcgtttagctctgagccccattttttaatgggg
ttatttgattttctggagtccaccttcttgagttctttatatatattggatattagtcgg
caatgggaggattttaaaattaactataattcactgagtgggatctctagagctaatttt
gcattaattacacttgctctgcaaattcccttgtgtaatagaaaagtgttattgttaaat
acttgtaagatgtggtgtcttctgtatctttctggaaattaacgatggtataataagggt
gtttaaaaattttacgttgaagaaacttgttttaatgttttcaagccttttaaccagcaa
atttatgaacatgacctatcgatgccccttaaaacctaggttatttatcatggtctttgg
gagaggctgggaaatgatcatctgaagggacagagcccgagactacaaacttagtggtct
gcaatctgctgcacactaatctttcttggctggatccaagacataccgagaaagaagcac
ttgctaatcacccagattgtttgatgcaccaatggctctcctatatcattagtagccact
gaatatgcattacatgttcgagctcctcacatagacagtatttcatcatgactaccaaat
gtctgccttctttcagctacaactcttgagcattgccgcagaccctcttggcccctttgt
ctgcgtggaacgggtctctagtcacgggtggacaaagcgtaggatgaattgacagacaga
ctcacacaggagaggtcgtgtggaatctgaacgtatttttcaaatcgaacatcagacgtt
ttatgcagaagacaataaggaagttgggtaacatattcgaaaggtacaaatgaggtaacc
agaatcttacataaaacagaggaacgcaaacacaaaaggtctaaagggaaccacccggga
tagaattcattgttaacaactgggatcaaaaagggtgccacctaagattcgcttaatctt
cgcttcacgcccttgccatagttcctattttagtctattgtatagtccaccttcccctta
ggccattgtaaatacgtgtgtatgggtgtaacttcgctatagttctaagtatctattctg
gtttctcctttggtctgaaacttccttcttccttagtgatggtagattcctgtgaaggac
agtgacctaacttttactcaaagtgatagtgtaataccagtggcagtactgaattccaag
cccaaggtcttgctcaaggatgttctaggactgttggaacactggctttagctaagtcag
aattcaatcttaaaaggcacttataataggaaaatactgaaagagagcatgtggatccat
acactagactaacacgggaatggaaaattaatgtatgggttagagggaacaccagactcc
aggaggagagcttccttgaagctctttgcctcatgagtgactttcaagcctctcgactta
agctgactcgaccagagtgcgtggcagagcattatcttccaaagtgtttgaaaggaggaa
gagaaattattctttatttttggtacctgaaccccaccatctacaaaatgggatctacat
gaaatatttctaagaggcagaggcaaaaagtgtggtaagagatattgtaaaaactttaga
tgatgctctgggggtatcatcgtactgcccagtacaattgttacttttaagggtaacaat
tattattagtattgtaaaggggctgaaacatattgaatgtagaataagatgatgctattt
tgaacaatgtatataacatatgaattcatcttggaattatagcaatgaagatggaggaaa
tgaagaaatttgattagtgggttgaaaagcacaatgtttaatatgaagatgcaattataa
taaatgtttatttaatgaaaactcagaatggctctgcattttcaatatttagtattcagg
gaaataaatggatgctggtgaatttcttcctgattctaacgtaaagaaagatgttatatg
cttaaagaagatttactctactttcttttatcaaacttctaaaaattcatacctgcattt
atttcattgtgctaggggaatagtaattatttatacaaagttctaaatctaccaaaaatg
tttacctataaaagcttaggaaagcgtacgttttatattctccctaattccaaaatggat
gtgtagtgattaataatgagaaatgttacaggatttttaaaattaagtataaggaggaaa
taaggtagaaagaataagaccagataagaaattaatatatgttaataaaatcaatttcta
tgcaattaattacagtttttaagttaaagacaatctcatgtaaattgaaaaggtacatag
aacaatgaaggaagagtacagatactcaaagcaatatttttattattatttattttattt
tatgtataggagtatactgtagctgccttcagaagagagcatcacatcctattacagatg
gttttgagccaccatgtggttgctaaaaattgatctcaggatctctgagagagcaGTCCG
TGTTCTTAACTGCTG
Primer
(+)GTCCTGTGGCTCCTACAATT
(+)CAGCAGTTAAGAACACGGAC


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