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Mouse element [ mm2052 ]


Position: chr13:14,928,837-14,934,111 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGTGGTTTAAGGAGGAACTggagtattgtattattcatgaaagggttagtagaacggtt
agtagaacagaacttccttggtgcatgtttttcactaggctcagaggaatagcataatta
ggtatttactaagagacccctggtggtgggtttaacaatagaccagaattgcacctggga
atttgtcctttcacctggctcctgtgaatagctgattttagatagggttggtcttatctc
tgttgtaaacactgcctagttccttctactctttatgtatgcatttctctgatttgtgtc
attatgcttaaggcaacttcaatgttccttggctgatgtgtcacctagcttccttggttt
ttttctgtaatgtaagtctgatgctcgatttgagaaattacattcggatacagcactcta
tctgtattagtgtctgtttgtcacttttcacagactccttgtctacctgcatacctgcat
accaggaccctggttctccttcgggttgagggaccaactgaatccagtctgtggcaggat
agcactacccttggcaggctaagggcaagtattgttttccaggactacaaagggaagatg
aactttctaaactcagcaatcacatctgaagcagttggtgtgtgataaaccctttaatgc
taaatattctcctatgaaacttacatagtttctccttcaagaatccaacttctttggaaa
gtgaagaagtgtttgatttctggaagttctctaaatcatagtgctctcctgcatcatcat
cactaccaccaccactatcatcattattatcatcatcaaatccaagtatgggtttgctca
tcaccaaatagcatgtcttggttttctttctaaatggtattctatatccacatttacagc
ttttcatataaacaggtatacagtatagtctagaatccacatatgagaaagaatggatat
tgtttcctgagattgtgtgactgtgcttaatattatatactctaagttcatctatttccc
tgaagatttcatattatttataaataaagaatattctatttatatgggtaccacatttca
ttatttattcatttgttgattgacatgtaagcttgttccatttgctttctttgtaaacag
agcagaaataaacatgtatatgcaaatatctctatagtaggatatgaagttctctgggta
tatatattctcaggggttgaaagcatgatcctttggcaggtatatttttaatgttttgaa
gtaccttacaaattgacttccataatgactatattaacttgtacacctacctgcagtgaa
taagggttcctatctccttccatcttctccagcatctgcagtgagatttattggttatgg
ttgtgctgaatgggctgacatggtatcttaagtaattttaatttgcatttccctgatgac
tagggatgttaaagtgattttcaaaaagttattgaccatgtgcctgttgagacctgtttt
tgctggctgagatgctgataggaaatttaatgtgcagttctctatacaaatcttgaatct
atgatgtgaacacacactctctgtgactgctttacttgcttggctctcagattttctatt
tcagaaatttcattacaggatggtacgtaattgtcttcaccacatgttaattttcatatg
ttgcaatgtctctgaagattcaactaataagcccagttttactggttttagagatgctga
gctgataaagatatttggtacaaatctgattttactcctctccttttggactcacagtaa
atttctcagaatggagcactgataatttaatattaatcttaacaggaaacttaatgttaa
gaggaacacaatccttggaatggcttttgaagtgcagttcaagaaataaatttaatctaa
aaataagaaatgggggttaagagaaagaaagcgatagtagaaaaacatggaaaacatgtt
agctacctttcttaaaatgattcaaagaaattcatggtcactgctttttttttagtgttt
tcaccatttttatttatttatttttggattagtcatttttttttcaacttttacttcatt
atacattacattaaagattttttgttatgttaacatagggtccaaaacatgaagtgtcag
tcactcacttcattccattagtgacacttgtgcctctaccccaagtctgacaggcataga
tatcctaagggtattccttgctacaggggttgggggttgcagctattgccatcaccactg
catttctgctggtgaacatcttggcaaatgagggcttcttaaaagacccagtgctccaga
gtgcattagctttatggtctttctgacaatatgccaaccttgtctactcagaacccagct
gaactgaactgtcctgtcctgtcctgccttttctttttctttttttttttttgggggggg
ggggttcaagatagagtttctctgtatacccctggctatcctggaactcactctgtagac
cacactggccttgatctcagaaatccacctgccactgcctcccaagtactgggattaatg
gcttgtaccaccactgcccagccaaaaggatctagtttttgtttgtttgtttgttttcct
tgagacaaggtatcattatgtagccctggggtggacttgaactcacagagatctacccac
ctgcctcagtttttcaagtgctggtgttaaaggcatgagccatcatgtctggttgcagcc
ttttcttttatgtactttttctccacacaagcagacatccatttagagaaatgacagcca
ggacactgaaaatatagtctcctctaactgagatataacccctgtagtgctttaacacat
ggaaggttagaatatatacacatcaccattattctcaatctcttctgatttttgtggtca
cttcataagtctgcagtcagtttacttcttcattcacactgattgttggtatatctactg
gcagcaagagatcacttttaaagttcttgcctcccttgctagagctaccaattattttgc
aatagaaactaaaactaaaaatgattcacaatgaatcaaggaagtagaagtcttgagctt
ctttttgccataatgaattggtgtctagaaacaagtttttcatttttgggcaggcttttt
gcaaaacacatgtacttttcactaacctatatgttcaattacagagttttactgagtttt
aaaatagttccatatatggcacatagttccaaagatacgtggcagtcatccaatactttt
tttttttctttttaccttaggaaagatgcaaacacgtgacattttactggggacaaatgc
atactttggcattctttgtcataggcaaactgaaattacagtgccttagtgtttaaaaat
tactcactacgatgtgaaattgccaaaagttatttagaacaagtctgttctccaattaat
aagtgactctcatgaaaaggaaatagtgtaaaactcaacatatgtgcacactgggtgtaa
gtatgaagagctgttcaggcttaattagagttattaaaatttcttccctcttttcactac
acagttcaagcaatgtgttgcctgggctatcacaaacaaagagactggatttaaaactaa
aactaaacatctagacaaatgttggctgtcaaagaaatcatctagaacacttacccatac
attctagtgaccacaaaaatccctcagtttctctaaattcctcttttaagttgacttgag
cctccaaggaaaattttgctgttttatgaaaaaggctatatttttaactagtattttttt
ctaccagtttttattagtcccttgagaactttatacattgtactctgatcacttttgtct
cttcctgccactctttccagatataaccccttccctacccactcaagtttgtgttcttct
ctcctcccatcaagtaaagtttgccatactcatattttgttggaagtggagccttcagtg
gagcatgggcaagtcactaggagcctcacccttacagaaaacagatatttcctctcccag
cagcagttgcaaacagcttcttagctagatattatacctcctcctcctaaagtccagtga
gcctaggagtcattgtggaagaggagtcggtcataaagattgtaagaatcataagtggtg
aatggctacaagaaaacaatgtttttctagacatagcagtataatttcacatgtgaattc
ctagtaggtatgagagcatgcacaagacctatgcaagatcaactctgaaaaaaaaaaaaa
acaaacctcagcatggaggaggaatgtagaaacaaagccccacctctagctaagacatta
tttgtattttgggtattctgagcttttgggctaatatctacttatcagtgagtgcatagc
atgtgtgctcttttgtgattgggttacctcattaaggatgatattttctagttccatcca
tttgcctaagaatttcatgaagtaattgtttttaatagctgagtagcattccactgtgta
aatgtaccacaatttctgtatccattcctctgttgaaggacagctgagttctttccagtt
tctggctattataaatcaggctgctatgaacagagtggagtatgtgtccttgtaatatgt
tggagcatcttttgggtgtatacccaggagtggtatagctggctcctcaggtaataatac
aatgtccaattttctaaggaactgccagactgatttccagagtggttgtatcagcttgca
atcccaccagcaatggaggagtgtttttctttctccacattctttccagtgtctgccatc
atcaaacaaataaaagatctgtatgacaagaacttcaagtctctgaagaaaaaaatcaaa
gatctcagaagatggaaagatcttccatgctcatgaattggcagaattatatagtaaaat
gaccatcatgctgaaagcaatctatggattcaatgcaatccccatcaaaatcccaactca
attcttcatagagatagaatgagaaatttgcaaatacatttggaataacaaaaaagccag
gagattgaaagctattctcaacaataaaagaacatctgggggaatcaccatccctgacct
caagctgtttacagagaaatagccataaaaactgtatgatatttgtaaggagacaggcag
gaagataaatggaatagaattaaagacccagaaatGAAACCACATACCTATGGCC
Primer
(+)CTGTGGTTTAAGGAGGAACT
(+)GGCCATAGGTATGTGGTTTC


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