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Mouse element [ mm2050 ]


Position: chr13:14,938,909-14,943,983 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTACAAGCTCACAATCCCATgaacaatggaggagttttcctctttctccacatcctcgcc
agcatctgctgtcacctgagtttttgatcttagccattcaggctggtgtgaggtggaatc
tcggggttgctttgatttgcatttccctgatgattaagaatgctgaacatttttttcagg
tgctcctcagccatttggtattcctcgggtgaaaattctttgtttagctctgagccccat
ttttaatggggttatttgatttccaggaatccaccatcttgagttctttatatatatatt
ggatattagtcccctatctgatttaggacaggtaaagatcctttcccaatctggtggtgg
catttttgtcttattgacggtgtcttttgccttacaaaagctttgcagttttatgaggtc
ccatttgtcgattctcaatattatggtacaagccattactgttctattcaggattttttt
cccctgtgcccatatcttcgaggctttcccctactttctcctctataagattcagtgtct
ctggttttatgtagagttccttgatccacttagatttgaccttagtacaaggagatagga
atgaatcaattcgcattctttgacatgataactgcctgttgtgtcagcaccatttcttga
aaatgctgtctttttttccactagatggttttagctcccttgtcaaagatcaagtgacca
taggtgtgtgggttcatttctgggtcttcaattctattccatttgtctacttgtctgtcg
ctatactgtaagaccccctttcagggacccccactctagtctcaggagtgagaccaccca
aagcaacacaagaatccatcttgctgtaatcacatgaggcagtttaatgacggagctctg
acctacatgcatcccacacaggagataagggatgttggccaggaggctcgaaagctaggg
gttttatggggtaaggggcttaggggtgtggaattcagcatagagacactctattggctt
attcaaacatcagcagaaaaattaaaagtacgtgcaaccagtcagagttctgtgagttgt
tgactcagttcagatagttctgttatgtcctcacattcctctttatctttctggtcaaga
tgttcccaggaatgttttaactacgaggcatacctggttttttggagttttttttttttt
ttgtttttgttgttttttctcagccccaggcagcctctaggctcacaaacaaccagcaat
ttctgagtattttatatgacttacaggtcttgaaatttcatctttctttcaataccagta
ccatgcagtttttatcgaaattactctgtagtacagctttaggtcaggcatagtgatttc
accataggttcttttatcattgagaagagtttctgctatcctaggttttttgttattcca
gatgaatttgcagattgccctttcagattcgttgaagaattgagttggaattttgatggg
gattgcattgaatctgtagattgcttttggcaagatagccatttttactatattgatcct
gccaatccatgagcatgggagatctttccatcttctgagatcttctttaatttctttctt
cagagacttgaagttcttatcatacagatatttcacttccttagttagagtcatgccaag
gtattttatattatttgtgactattgagaagggtgttgtttccctaatttcattcccagc
ctgtttatcctttgtgtagagaaaggccattgacttgtttgagttaattttatatccagc
tacttcactgaagctgtttatcaggtttaggagttctctggtggaatttttagggtcact
tatatatactatcatataatctgcaaaaagtgacatttttacttcttcttttgcaatttg
tatccccttgacctccttttgttgtggaattgctctggctaggacttcaaatactatgtg
gaataggtatggagaatgtgggcagccttgtctagtccctgattttagagggattgcttc
cagcttctcaccatttactttgctgttggtttgatgtacatttcttttattatgtttagg
tatgggccttgaattcctgatcttttcaaaacttttatcatgaatgggtgttggattttg
tcaaatgctttctcggcatctaatgaaatgatcatgtggtttttgtctttgagtttgttt
atatagtggattatgttgatggatttccgtatactaaaccatacctgcatccctgggatg
aagcatacttggtcaggatggatgattgttttgatgtgttcttggattcggttagcgaga
attttattgaggatttttgcatcgatattcataagggaaattggtctgaagttctctgtc
tttgttgggtctttctgtggtttaggtatcagagtaattttggcttcattgaatgaattg
ggtagaggaccttctgcttctattttgtggaatagtttgtgaagaactggaattagatct
tctttgaaggtctgatagaactctgcactaaacccatctggtcctggccttttttttttt
ttttttttttttttgttgagagactactattaatgactgcttctatttctttagggagta
taggactgtttagatcattaaactgatcctgatttaactttggtacctggtatctgtcta
gaaatttgtccatttcatccaggttttccagttttgttgaatatagccttttgtagaagg
atctgatggtgttttggatttcttcaggatctgttgttatgtctcccttttcatttctga
ttttgttaattaggatgctgtccctatgccctctagtgagtctggctaagggtttatgta
tcttgttgattttctcaaagaaccagctcctcattctgttgattctttgaatagtccttg
tttccactttgttgatttcgtccctgagtttgattatttcctgctgtctactcctcttgg
gtgaatttgcttccttttgtttagagcttttaggtgtgttttaaagctgctagtgtgtgc
tctctctactctttttttggaggcactcagaggtatgactttccctcttatcactgcttt
cattgtgtcccataagtttgggtatgttgtggcttcattttcattaaactctaaaaagtc
ttttatttctttattccttccttgaccaaggtatcattgaggagagtgttgttcattttc
cacgtgaatgctggctttctattatttatgttgttattgaagatcagccttagtccatgg
tgatctgataggatgcatgggacaatttcaacatttttgtatctgttgaggcctgttttg
tgaccaattatatggtcaattttggagaaggtaccatgaggtgctgagaagatatatcct
tttgttttaggataaaatgttctgtagatatatgttaaatctacttgtttcataacttct
gttagtttcactctgtccctgtttaatttctgtttccacgatctgtccattgatgaaagt
ggtgtgttgaagtctcccactattattgtgtgaggtgcaatgtgtgctttgagctttact
aaagtttctttaatgaatgtggctgcccttgcatttggagcatagatattcagaattgag
agttcctcttggaggattttacctttgatgagtatgaagtgtccctccttgtctttttga
taactttgggttggaagtcaattttatccgatattagaatggctactccagcttgttttt
cagaccatttgcttggaaacttgtttttcagcctttcattctgatgtagtgtctgtcttt
ttccctgagatgagcttcctgtagcaggaaaatgttgggtcctttttgtgtaggcagtct
gtaagtctatgtctttttattgggggaattgagtccattaatattaagagatatttagga
aaagtaattgttgcttcctattatttttgttgttagagttggcattctgttcttgtggct
gtcttcttttagttttgttgaaggattactttcttgctttttctagggtgtgatttccgt
ccttgtattgttttttttttttttttctgttattatcatttgaagggctgcattcgtgga
aagataatatatgaatttggttttgtcctggaattctttggtttctccatctatgttaat
tgaaagttttgctgggtatagtagcctgggctggcatttgtgttctcctagtgtctgtat
aacatctgtccaggatgttctggctttcatagtctctggttaaatgtctggtgtaattct
gataggcctgcctttatttgttacttggcccttttcccttactgcttttaatattctatg
ttcatttagcgcatttgttgttctgattattatgtgtcgggaggaattttttttctggtc
cagtctatttggagttctgtaagcttcttgtatgttcatgggcatctctttctttaggtt
ttggaagttttcttctatgattttgttgaagatatttgctggccctttaagttgaaaatc
ttcattctcatctactcctattatcagtaggtttggtcttctcattgtgccctggatttc
ctggatgttttgagttaggacctttttgtattttgcattttctttgattgttgtgccgat
attctctatggaatcttctgcacctgagattctctcttccatctcgtgtattctgttgct
gatgctcacatctatggttccagatttctttcttaggatttctatctgcagtgttgccta
tttttgggttttctttattgtgtctacttcttttattatgtctagtattgttttgttcct
ttccatcacctgtttggatgtcttttactgtttttctttaaagacttgtaactgttttca
gtgttctcctgtatttctttaaggacttataactctttagcattgttctcctttctttct
ttaagtgagttattaaattccttcttgatgtcctctaccatcatcatgagatatgctttt
aaatccgggtctagcTTTTCAAGTGTGTTGAGGTG
Primer
(+)GTACAAGCTCACAATCCCAT
(+)CACCTCAACACACTTGAAAA


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