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Mouse element [ mm2049 ]


Position: chr13:14,943,648-14,948,722 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGATGCTCACATCTATGGTTccagatttctttcttaggatttctatctgcagtgttgcct
atttttgggttttctttattgtgtctacttcttttattatgtctagtattgttttgttcc
tttccatcacctgtttggatgtcttttactgtttttctttaaagacttgtaactgttttc
agtgttctcctgtatttctttaaggacttataactctttagcattgttctcctttctttc
tttaagtgagttattaaattccttcttgatgtcctctaccatcatcatgagatatgcttt
taaatccgggtctagcttttcaagtgtgttgaggtgcccaggattgggcgagttcggaat
gctgcattctgatgatggtgagtggtcttggtttctgttaataaaattctttttttttcc
attttttattaggtatttagctcatttacatttccaatgctataccaaaagtcccccgta
cccacccacccccactcccctacccacccactccccctttttggccctggctttcccctg
taccggggtgtggggagtgggtgtggcggcagtcccaaaggtgccagggactgtagctaa
gtcgtatgacttgcacctgacttcctcatataagccacaaacatcttgagagctgcgcaa
gtgcaccaggataccggtgaatccagtttgatggagatatgcccctgctgccctgattag
ctgaagctgcgtgactggtgaggcagcatggcctgctgtgcgtggatgagagtataaaag
gaatgagaggcccagggttcgggggagatataaacaagaaaatcaggactgaataaactg
ctgttagaaggactggtggtcgtgtcattcttgctggtcgagagcggacgcgacaattgg
tggcccgtatggggaaccgactcccccaccgagttcagaactttcagcagtcagtggttg
ctggcagggtaagttcacagtgagtgaaacttgcgaccccaggagtttgggaaggacctc
ggataaaatagaggagagcataaagttgccaggaagtaggcacaaagtaacccaggagtt
tgggaaggacctcggataaaatagaggcgaatatatagttgccagaaagcaggctttggg
acaagttaaggttcccggctttgggacaagttaaggttcccggtttgggacaagttaagg
ttcccggtttggggacaagttaaggaactatgataacctcagtgtagtgatcaatagatc
ctccctgtgtagttatgcttttttcttccattgaccctttgtgggtaggtctgatagttt
tggtcttgtttgttctgatatatggactctgttactgtttgaaaatgtgtgtagaggcag
tcaagacaggtcagaaaatccttacagagcaacaagaaagtatgtcggaagaggagaagg
gcttaaaaagaaaaagggaaaagaaagaagacacagtaaaatcaggtgaacagaaaggac
aggacaacagagtcgaggcagaggaggaaggtgaattagcttctgctccccctccctatg
cctcctcatcagccggttatggacagaccttctgtccggaggtctggaaagaagttaggc
tctccttgctaggatgtcctgttttcactgaccaaacagggcagagatatcatgagcctc
tggatttcaaggtaattaagaatttggctgagtctgtgcggacatacggcctgagtgctt
cctatactgtggctcaggtggaggccttgaatagacactgtatgacgccgtccgattggg
caggcttggtgaaggcatgcctttcacctgggcagtatttagattggaaagccttcctta
tcgaatttgcaagcgaacaggcagctgctaacgctgttgcaggaaatccagcgtgggata
gggatatgctgcttggtcaaggtcggtttgcacaacaacaaacaggatatccactgcagg
tgtttgagcaggtgaatcagattgccataagggcatggaaatcattgcccaacagagggg
aagtaagtggaaacttaaccaagatcatacaaggtcccactgagccgttctcagacttag
tagcaaggatggttgaggcagcaggaagaatctttggtgaccctgatactgctatgcccc
tgataaggcagttggtttatgaacaatgtacccaagaatgtaagactgccattgcgccct
ttagaagcaagggtatcgaggcatggatgaaggtttgccgagagcttggtgggccattga
ccaatgctggtcttgctgcagctgtcatgcggttgcaaaagagaaagaggaatgtgcctc
tcggagcttcctttaggtgtggcaagcagggacacttgaggaagaattgtcctgaaaaag
gaagtggctccaggggaagcgggacttgcccccctggactccctttgtgtccaaagtgta
ggaaagggaaccactgggctagtgaatgcagatcagtcagaaacatccatggccagcctc
ttactcctggaaatgaacgtgtgtggtcaaaaaacgggcagcggggccctcgcttccagg
gcccgcaaatatatggggcagtggacagtttccagggggaagaggagacctggccaacat
tgagacatccccacaaccgcggagagccactgaaggttcagcaggattggacctccattc
aaccaccagactcgtattaactccccagatgggcacacaggtgattgagacagattttaa
aggtcctctacaaaaagatacagtaggattgttatttggccgctcctcgtctgctttact
cgggctcattgtccatccaggagttattgaccctgattatcaaggggtagttaagattat
ggtctcatcaccacgaggtattgtgtccatctcccctggggattgagtagctcaaattgt
acttttacctagccttcatgggctcttcccctccgctggtaaacaaagaggaaaaggagg
gtttggtgcctcgggcgtagacctgacatgtctctctctccagatggaccagcgtccagt
tctggagttgagggtggatgacaaagccatcctagggctcctagatactggagctgatcg
cagcatcatagcacagaaggattggccccagggatggccagtgcaaaattctaatcagat
gctgcgagtcctagggtatgcaaaagctccggatatgagtgcaccgagtctgaaatggaa
agatgctgagggccattcaggggaaattcagccttacgtgctggagctccccatttcttt
atggggaagagatctattaaaagatttaggcttgagacttaccaatgaatcttcacctac
ttctcggcatctgatgcaggatatggggtggcacccttcctatgagttagggaaatattt
gcaaggaaaaaagtcccccatgatacagaggaggaaaatgaatactgaagacctgggttt
ttcctaagggccactgaggagggcattcctataacctggaataagagggatccagtgtgg
atacctcagtggcccttgtctaaggaaaaattacaggcagctaaaagtttggttgaggag
caacttcaattaggccatattcgtccctctgtttcaccatggaactcacctatctttgtg
ataaaaaagaagtcaggcaaatggagattgttgcatgatcttcgagccatcaatgcacag
atgcagattatggggcccatacaaagaggcttgcccttgttgtctgctttgccccaggat
tggccccttatagtaatagatattaaagattgtttcttttctattccactttgtgcccag
gatagtgaacgttttgcctttactcttccatcatgtaaccacgaggagcccgatggaaga
tatgactggattgtgttgccccaaggcatggctaatagtcccaccatgtgccagttatat
gttagtcaagccatagagccaattagaaaagtctttcccaaattgtgttgtgcatattat
atggatgatgtcctcttgacagcaaagacagaagaatatcttcattcagcctatattgcc
ttggtgaaagagttacaaaggtggaagctgtatatagcacctgaaaaggttcaacaagat
caagtagtttcctatttaggtgccaggatttctcttactgaggtgcagccacaaaaggtt
cagttaagattagattctttacatactcttaatgattttcagagactattgggagatatt
aattggattaggccatatttaaagatacttaatgttgtattaaagcccttgtttaagata
ttggaaggagatccagatttaaattcagtgaggagtctgacccctgaggctagacaagcc
ttgtccattgtagaaaaggagctgagtaaagcgcaattaatgagatgtaaggagggaatg
cccatcaaccttttgatactgcaaacagaaatgcagcccactggtttagtttggcaggaa
ggacctttgctctggattcatccaagaatatccatgggtaagaccgtggaacattatcca
actgcagtagcaaatttggcgttggtaggagttcaacaatgtttgcagcattttggatgt
caaccgagtatactggttactccctatgatagtcatcagcaaaaggttttggtagccaca
gtggatgaatgggccattctgttttgcagctttaatggcataatagataatcattatcca
aaacatccattggttaccttttataaagctcatgctgttgtgtttcctaagatagtgcag
gaaaggcccatttcaggagcggtgaatgtgtttacagatgggtccaaaactggatgtgga
gcctatcttattgaatctcaacaaccggttcttaggcaatatcaacccggagcaccccaa
ttggtggagttacaaattgtattagaagtattttaaaattgtcctttttccttcaattta
atttctgattctcagtatgtggttaatatggttaaaggattagaagttgcaggacaaatt
cgatcacatagtcctATATTTGAATTGGCCGCCTA
Primer
(+)TGATGCTCACATCTATGGTT
(+)TAGGCGGCCAATTCAAATAT


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