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Mouse element [ mm2048 ]


Position: chr13:14,948,385-14,953,394 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCAAAACATCCATTGGTTACcttttataaagctcatgctgttgtgtttcctaagatagtg
caggaaaggcccatttcaggagcggtgaatgtgtttacagatgggtccaaaactggatgt
ggagcctatcttattgaatctcaacaaccggttcttaggcaatatcaacccggagcaccc
caattggtggagttacaaattgtattagaagtattttaaaattgtcctttttccttcaat
ttaatttctgattctcagtatgtggttaatatggttaaaggattagaagttgcaggacaa
attcgatcacatagtcctatatttgaattggccgcctacattgcagcagctcatttggca
gcgctccactccagtgtatattaatcatattcgcgcctatacagggctcccaggaccttt
gagcagagcgaatgatgttgtggatgcctgcacgcgtatgcaatttgtgtttctatccac
caccttagaattggccaaagcctttcatgctaagtttcatgttaattctagtaccttgca
gaaaaggtttcatatctctagggctgaagcacgagacatagttgtctcctgtgggcattg
tgctgtgttccaacatcctccttcttttggagtgaatcctcggggcctattgccccttca
ggtgtggcaaatggacgttactcatgttcctgagtttggaaagcttaaatatgttcatgt
ctcagtggatacctgctcaggtatcgtacatgccacacctatgtcaggggaaaaagcaat
ttatgctatccagcattgtctcgatgcctgggctgcctggggtaaaccccaacagcttaa
aacagataatggacctgcttatactgcaaagtcctttatgtccttttgtcaacaaatgga
agtgcaagtgaagcctggcttgacctacaatcctcaagggcagggaattattgaaagaac
acatagaaccatcaaagagatgttatacaaacaaaaggggggaataggctatagccgtac
ccctaagatgagactttctttagttctttatactttaaattttgtaaatttgaataaaga
tggccatgcagcagcagatagacatgttcaaagagtacctggcttacaaggatatgccag
gtggaaagatgtgcttacaggcacatggaaaggaccagatccagtgttgacgtgggcgag
agggtctgtttgtgtgtttccacaggaccagatggaacctctttgggtgccggagagatt
ggtgagacgctgcaagaatgaggctcctgatccagttgcccctgtggatgtggtggatga
tcccacaagcacaaaggatggagccgagatgagagagatgagagatcctttcggtattcc
agaagccgataccagctcgacatgacattcaaatttttccacgctttttgatccctgaat
tccccttaaagagatagcccctctggctatctatcccttgcttcagagaagatgagtggg
gatgagagccctgggatgtatgcttgtaatagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgttgtgtgtttggcacatgtgttaggtgcagcatgtgca
ggcccgcactttcgccatggtagcgtaggcttttgctgcagtggaggcgggacaatctca
gattcggtttgccgctctaaaagaaattatactgcgttatgccgtggggtgcgaggctaa
gcactgcacagaggatagcttactgttggcatcctgtggaaggcacgtctgagtgcatga
aagttcagtgtcctagttcccttcccccaggaaaaacgacacgggagctggccaagacct
ctctgggtgatgagcccaagggatggttttgtgtagggcccctatgcttgcacactgggg
atcagacctctaccttcacccatgaggcttgcttgcagcaattaagatctggccatagat
tatcaacatcctggccttttgatgcacctgccacaagcaaaacacaatctccccaggtgt
ggcttggcatgatagagagatagtcagtgataagactccctgggcatgtcaccaacctaa
gacagggatcaaaccaatgctgtttgtcacccaaggacgggtaaggggcatggctgcggg
ggggctatctacagacattctctctgccaaaaaagaaaaaagggggagatgtggggagcg
ggtgtggcggcagtcccaaaggcgccagggactgtagctaagtcgtatgacttgcacctg
acttcctcatataagccacaaacatcttgagagctgcgcaagtgcaccaggataccggtg
aatccagtttgatggagatatgcccctgctgccctgattagctgaagctgcgtgactggt
gaggcagcatggcctgctgtgcgtggatgagagtataaaaggaatgagaggcccagggtt
cgggggagatataaacaagaaaatcaggactgaataaactgctgttagaaggactggtgg
tcgtgtcattcttgctggttgagattttatccttttgttttaggataaaatgttttgtag
atatctgtcaggtccatttgtttcattacttctgttagtttcactgtgtccctgtttagt
ttttgtttccacgatctgtccattgatgaaagtggtgtgttgaagtctcccactattatt
gtgtgaggtgcaatgtgtgctttgagctttactaaagtgtctttaatgaatgtggctgcc
cttgcatttggagcgtagatattcagatttgagagttcctcttggaggattttacctttg
atgagtatcaagtgtccctccttgtcttttttgataactttgggttggaaatcgatttta
tccgatattagaatggctactccagcttgtttcttcagaccatttgcttggaaaattgtt
ttccagcctttcattctgaggtagtgtctgtctttttccctgagatgggtttcctgtaag
cagcagaatgttgggtcctgtttgtgtagccagtctgttagtctatgtctttttattggg
gaattgagtccattgatattaagagatattaaggaaaagtaattgttgcttccttttatt
tttgttgttagagttggcattctgttcttgtggctgtcttctttttggtttgttgaggga
ttactttcttgcttgttctagggcgtgatttccatccttgtattgctgcttttctgttat
tatcctttgaagggctggattcgtggaaagatattgtgtgaatttggttttgtcgtggaa
tcctttggtttctccatctatggtaattgagagtttggccgggtacagtagcctgggctg
gcatttgtgttctcttagtgtctgtataacatctgtccaggttcttctggctttcatagt
ctctgctgaaaagtctggcgtaattctgataggtctgcctttatatgttacttgaccttt
ctcccttactgcttttaatattctctctttatttagtgcattggttgttctgattattat
gtgtcgggaggaatttcttttctggtccagtctatttggagttctgaaggcttcttgtat
gttcatgggcatgtcattctttaggtttgggaagttttcttctattattttgttgaatat
atttgctggccctttaagttgaaaatcttcattctcatcaactcctattatccgtaggtt
tggtcttctcattgtgtcctgaatttcctggatgttttgagttaggatctttttgcgttt
tgtattatctttgattgttgtgccgatgttctctatggaatcttctgcacctgagattct
ctcttccatctcttgtattctcttgctgatgctcacgtctatggttccagatttctttcc
tagggtttttatctccagcgttgcctcgctttgggttttctttattgtgtctacttccct
ttttagttctagtatggttttgttcatttccattacctgtttggatgtgttttcctgttt
tttttaaggacttctacctgtttggttgtgttctcctgcttttctttaagggcctgtaac
tctctagcattgctctcctgtaattctttaagtgacttatgaaagttcttcttgatgtcc
tctatcatcatcatgagaaattttttaaaatctgggtctagattttcggttgtgttgggg
tgcccaggactaggtggggtgggagtgctgcgttctgatgatggtgtgtggtcttgattt
ctgttagtaggattcttacgtttgcctttcgccatctggtaatctctgaagctagctgtt
atagttgtctctgttaagagcttgttcttcaggtgactctgttagcctctataagcagac
atgggagggtagctctctccttagtttcagtgggtagagtattctctgcaggcaagctct
cttcttgcagggaaggtacacagatatctggtgttcgaaccggactcctggcagaagttg
tgttccactcatgagaggtcttaggatcccgtgtggaatcctgtgtgggcccttgtgggt
ttcgggcaactccacttggaaggtaccccggggctcgagtggagcggaaggggcttgtgc
cccaggtcaggcccgggtagtctgcttccctatttaccgcagtctctggttccgagtgat
tggattggggcaggcgctgtgttccactcaccagaggtcttaggatcccgtggggaatcc
tgtatgggcccttgtgggtgttgggcgactccgctggcaaggtactcctgttaataaaat
tcttatctttgcctttcgccacctggtaatctcagtggtccaaagattgcttggagagtc
ctccaggggaccctgggggtgttggtcaactcttcgtgcaaggcgaccttgtgctggctc
tgaccaaaagggatatgtgaccctggtcaggctgggttttctgcctccccaatgctgttc
caggttccacGAGATTGGATTGGAACAGAA
Primer
(+)CCAAAACATCCATTGGTTAC
(+)TTCTGTTCCAATCCAATCTC


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