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Mouse element [ mm2047 ]


Position: chr13:14,958,352-14,963,737 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGCTCAGAAAGCAAATCACagctaattagtgccattgctgataactttttagatttcta
attcttaaatattttggaaaatcattgctacatatggagttcaactaatgtctaacaaac
atttctttagtcctaagaaaacatggaagaaaaaagtattagtttttaatgaacattcaa
cttaatgttcactagtagagggcttgataaggcttacttatttggaatttatttttcttt
attgtattctataatataaaaatatttggaaatgagaacaagtgatgtattgtcttcatt
atttttctgtactttggatttaatgtaatgttgttgttgataatctaaaataataaatat
tctaaatttaattaaaattgaaaacaattctttctctcgagtccaatattttgctatttc
tgtgtagctaagtgtctggtcagttgtgtgaattattatgcaactgaaaaaatttcttag
atatcatcagtctctagttcaggataaatacagccttacatattcctaaagtagataaag
ctttaaagacccccccccttttttttacaggtttctcagctttaacatctctcctcccct
ttttttctgctgaaagatattttattctatatacaatagggatctgtacccaggaaattg
taacagtattgttacactttataagatttctttgttctaacaaacccttaaggcagataa
agccaaacttctggaacttgattatagaattcaaagattagtttattctcctcctcagct
atgagtgataatggcaatgtagcattttaaaaaaagatttatttattttatgtatatgag
tacaccattgctctcttcagacacagcagaagagggtatcagaccctgctacagatggtt
gtgaatcaccatctggttgctgggaattgaactctggaagaccaatcagtgcttttaact
actgagccatctctccagccccattgtagtattctttactatgtaccctttagtcactct
tcctataaactccttcaggtagagagatgagatattaacacagcagcattagtgatatat
gtgtgtgggagaggttggaactgttgatgtaaacaaatctctcagattcattctaagccc
acttcttaaacagcagcattagtgagatgtgcaaaaggagaagttggaactgttgataga
agatagctcaggcagtttacagattccatctccttataatgtcaaatataggatggctgg
aaaactactctgcctcccttagttttgtttaaactaacaaattctttattcaaataatcc
attagttcccagcacagtagttatactgatatttcctttccaagctggaatactcatttc
taaacaagctgtctctcacctcctcaacctccatacacctctacccagtgcttaacctgc
aatgctcccaatacattcacattcacattcctctacttggtaaaatacagaattagggac
acaaggactctttggctgctttaacctggaaccttctactcacaaggaagatttgacttc
tataaagacttcacacacacacatacacacacacacacacacacacacacacacacacac
acacacacgtaaggtcagcttcaaaaatagtaacagtaactaagaacccatcagctactt
aacccttgaggcttgttgcctcagcagtcttaagctggcacaggtagccataatttttct
tggtttctagtataagatgtaagcttggatactctgtatctgataacagcctagggatca
actccagccccaacaggttcaaattaactcccggaaaaaggcaaaatgaagcaagcaaaa
gacaacattttccttctgtcaaatcttgtgtatctgggcagctaccagagttgcccgcaa
cagacaatgtagaacttcccacatcagtcaagcaatcaggacacttctggtgaagctctc
tggtgatcgattttgtggggcaagtttccattaaaatcaaccataataatggatgtatac
agtataatcatatcttcgaaggccaaccaatgaatttagttctggaaataaatttaacac
ttgttgacgttttcttctttcacattgctatcagtgttttggtgaaggttaccagacttg
agttggaggaaaatatgtgtactgtgtaatcaaagcatcttgtaaataatccagcactct
ttctcaaggactgttgttgctcctagcctgtgtatttgaaagcagggatcaggttagtga
cctcctgtggtgagatgcaggtctgaccacattttcagaacaatgtctttgattaagatt
gtgagtggcctggactgtgagtgataaaagcaatgtagtattctttactgcattctctct
gtgtgtgcaactttccatggtcttcaaaatgatctcatggctcatgccctattcgtttga
taatgctcatatatttacagattaaaaaataaaaataaaacagatggcatagagctcaca
ctcccccccccccccccggaattatgtggcttgctatgaagcagaggtaatgacatagct
ttagagcctgtggacaaacattttatactgtatcctggatatattataactggggaatat
aaagtttgctagaccaaggggattctcttcccaatgatggccgactaggccatcttctgc
tacatatgcagctagagacacaagctctgggggtactgattagttcatattgttgttcca
cctatagggttgtagacccattcagctcttgggtactttatctagctcctatattggggg
ccctgtgttccatcctatagatgactgtgagcatccacttctgaatttgccaggtcctgg
caaagtctcacaggagacagctatatcagggtcccttcagcaaaatcttgctggtgtatg
caatagtgtctgcatttggtggctgattatgggatggacccctgagtggggcagtctctg
gatggtccatcctttcgtcttaggtccaaactttgtctctgcaactccttccatggatat
tttattccatattctagggaggaatgaagtatccatgcattggtcttccttcttgatttc
ttctatcttttctttggtcacctctctaagtcctttactttttctccttttaaatttaag
gttaatgcaacgacaaagtctagcatgacatagtcatttttaagtttaagttaggtgagt
actgtcattagctcaacaggtcttttcaaatatcttattgagctatgttgttgagtaaga
ccttcatgatcatataatcttgtggaggaaacaggcaccaacaaaactgatgcataagaa
aagaatcacctgatactgtactcactcatggagagggctccaagctagagggacaactgc
aaagtaagggactgttaggagtgatcactgagacaaggctagggaagagcattctaagtt
ggggagaggcatgttcaaagtcaggagacaaaccaatgtaaccaactcagacaatttcct
ttcccacaaatctggctttaatctgaaccacctgcctgagattccagaactacaattaac
ctctaaggactgtgtggttatagctgggattatcgacccaaatggctcagaaactttgaa
tcttgcccctggccaaaatgccctctctttcatgtctatggggtagtgagaaaggaacaa
gcataattctgagtctcttttactccagggtattatgggactgggagtgggacagaatga
ccactgcagctcaagattagtacagaattcaggatggaggatcacaataaataaataaaa
taaagctggcaaagtagctcagattatgaaagtttgataacagagcttatagtgtcagga
gacaatcagctcttcaaaagttgagttccacatgcaagtgacagcactctcatctcaaca
aaaacaacaacaatagcagaaaaaaagtaatatctcattcagttcacaactcaggaagag
aggccaagtatccactggactgtgattctgtatttctgttttctcaggcatatgttttgc
agtaatagagaatgtaaagggtatgtgctatgaataggccaagacttccacttgggagaa
atggaagtgaccttgatacattttatttctatgaacattgtggtgcttgagtagtgaggt
ttctactgtcatagtgaaagtattttctcttttctattggaatattttctttgtacataa
tgtcgaaccacatgcaggtgatatttttcaagtatatcatgtacttaggttatatgtctc
aactttctgccttttcttcctagtcccataattccttcgtctggctagtctcctttcttc
cccatctcccttcttttgtatgtctgtaaagcattttaggacccataaataaggaaaggc
acatgatatttgtgtttatggcttagttttcttaaaatgattacttccagtaatatatat
tttctaacagaaaacatgaccatttattactagtaatgctgcaattagcatggttatgct
cctctatggtatattgatctggagtctgttgggtagaaataagccaaatatatactagta
gatttttgaggaacctccatgttgattcccatggtgactgcacagggccatatcctcatc
acaagtatgtaagagttctctttcccctataccctatacagtatttagcattgctccttt
tagtaatgatagccattctgactggggtgacagaaataatctcaaaatagttttaatctg
catttccctaatagttgaggatgtttaacctttcattacatagttattggccatttatat
tttatcttttgagagctctctgcttagtttccgtagcctattcattaattaggtggttta
gatttttgttatttagttttctgagttctttatatattctagatattagtcttctgtcca
aggtataggtatcagaggatgtctggcattctggcatctccccttcacacaactgactgt
ttaatttcttgtgcatgtttccaaaatcaagtaatcacattcatcaattcttggtatcat
ttcccaagtaactagaatctgtttcagatattccttccctacatttatatcttgacatga
ttaagtgtaacagttttagagtttcaatttttcatttggaacagccttttcaaaaaggaa
agaactggagatctagttccgttcctccacacatcggtgtttccatttagtagcattcac
ttcagggtctatttttcttcattgtctggctttatcatctttgtcaaaaatggcatcaga
gtagctgtgtgagtttacttctcctaCATGGTGGTGTTTACCAGGA
Primer
(+)CTGCTCAGAAAGCAAATCAC
(+)TCCTGGTAAACACCACCATG


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