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Human element [ hs2047 ]


Position: chr11:74,781,340-74,785,285 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NEU3 - OR2AT4

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAttTGCCATAGGAGAAGGGAAAAaggagcctgggcttgccacttggggcagaaagagga
atatctaggaccatattttgagaaagggtggtggccccaggaacagcatacttctgataa
ggagaaacttctccactcagccacccagtgtctctacttagccaccatggggaaactatg
gtgtgctgataattaaaataactaatgttttttacccaaacaggtgtgctaagggacact
gcttgcctgagcataagctgggtgaggggcatgctctgcttctagggcatcatgcgggtc
tagatagcagaggcaaatttcctgtgtgtctggcattgaaaatcagtggtggcagtgaat
tttcaagcaacaaggattgagatgggagcagtttcagagtttttccattgaggaatattt
ctatctaagttgctatttcaacaaaaagggcaagaataattcatatctaatagctggcaa
tgcaagggattttcagaaacattgaaagaaaagatccaagggaaaagacagagtttcttc
ctaatcaaatacttggaaactgcaagaatcaaaactgtttgaattaatggtaatgtgacc
tcaattatattcacagtcttgtgaaatttggggttcacaccttaaaattgaatttaaaaa
tcctactcttttttctatgaattaagaaaaaaattatcattttattataatggaggacta
cctaggacaatattttgagaatgagtgttctaactactgggctttctaaattttccactt
ttccctctatgttattgatgtttatgagagaagatgaagttatttctttgaatcagggtt
tcctagcattctttggctcctggggacatgcaatcttggtgatggctgctttgacatcct
tgttcctcagtttgtagatgacagggttgagaacaggtgtgagaatggcatataccacat
tgcccatgacgtggaagtctaggggcaggtcagccctgtaggccacataggctatggcaa
tggatgaatagtaggtgcccaccaccaggaggtgggagctgcaggtggagaaggctttgg
agcgtccttcttggcagttgatgcaaagcactgaggtcaagatgtgggcataggagagaa
gcaccagcagaagggggaggaaggacaccaccatggcgatgcagaagcccatgaaggtct
gggggtggtgtcagagcaggaggcctggaccacagccaggtggtcacagaagcagtggta
gatgtggacaatgatgtcaaatgccatctgggaggtctgtaccactgctggaatgggcag
gaggagggcagtgagccaggcactggttgtcaagacagtgttggtctgaggggtcatgag
gacagggtagtgcagtgggcggcagatagccacatagcggtcataggccatgaccaccag
gatgaaggcttctgagcaggagaagctgtggaacaggtacatctgcaggaagcaggcagg
gaagctgaggaagctgtccccaaacaagaacagggacagcatcttggggacagtggttgt
ggtaacaagaatgtccaaggtggagaggtttatcaggaagaagtacatgggcttgtggag
gctgggcttggccaccacagccaccaggataaaggtattacccatcaggatgagcacgta
gaggaggagaaagacaaagaaaataggaaggaaaagggattttggcagagaggggatgcc
cataaggtagaaggtggttgaggagtcccctgatccattacaggtgattgtttccatagt
gggttaaagctggaggctccgaagttgagtactgggaacacctgggaaccaggcccatct
ggaagccaaaacaaccagagattctgtaaggagaattacttaatgatcactgtataataa
atagataatgggctctatcttatctaaaaattcttcatcctatcccagaattctctcttt
cctttttaaatcaagtatggaaaaagtacctacaatatataaatcgtgttatttgctgga
tatatagtagacaagttggtggggctgaagaaagacattaagcaatgaatcacataatta
tttaattgcaattgtgttaagtgctttggaagaacttctagtccacttttccatgttcca
tatgattattttggggatatcagatctcttaaaccagaacaccgagttcctttttctgtt
ggcatttgctttaagttttttaaaaatggcatctttgttaccacattgaatagggagggc
tgatttctcccaggttcactgcaacatgctgtctttccatcataattattaactagggaa
tggctcctttctgtcttgtttgcttggtgcagtggttctgctatttccatctaagctgag
ttctctgtatcctgtctctgactatggggctctttgttatgttatagggaagggagtgac
actgaaatgctcttgaaaggacgagtcattcctgaccgggttcctgataatggcttcttc
cacagctgggcaacaacagagaatccaagacagtctctgtaactcctttgagcttccctc
cctgctggctgctgcagctcagctgtgctcctgtttgaccactgcattcccactacccag
taggcttctctgcttctttgctagtcagaaagtgtcatggtaacctgggaaaacttggga
ggcatgattgatagaaaagaactaactggagatctgttcgtagtagctgctccgagtcaa
aagaacccctttcagaaccaggaatgagtgcttcaacccacagacgcagggattttgagc
tgaaggaaagtactgattcaccctctactttaggcttgtctcttgcgctaaaggaccccc
ggcacaggtctttgttgacatttgtatcactgcctcgttaatcccaatgattccaggagc
agtttccactaatttttcccgagtcacttctaatttcccattcttctaacgaaacatctc
tcatggataaaaccactaatgtgaaaaatggaaaagatgtttattttcaagtccaactaa
tttaccccccatagtccagagaccgatcacggaaagaccaggggctttcccgggtgccac
ggccagctggctgcggagccagaaacactgtgccaggacagggttctttcttttatacgt
gtttcctaaagaatacagaagtccaagtttccaagagaaaataatttaagacaaagcttt
ctatttcccttttttgttttctagttgctaacatcaaacaaaactaaatttcaaattttc
ctctaggtttctacatggtaggtactaaatcactgtctagcaatgcaaatgcttctttaa
aataatgtcgcaagacctggcaagagtgaacttgctttgtcccaagttgagaaggttatc
cctcagttaaccagaaccccatcccaacagattcagtagctaggttttcctcatacccaa
agggggcaaactgcacttccctggacattgctgcactcagagagtgagtcatgggctgac
tgtccccatgttagacagagttgggggtctgagggacagaaactcagaaggtcaaagcca
gaggggcccttggaggccatccagtccagctgcccctcttcctctctcctctatccactg
ctttgcagaaggagacatggatgctgagaccccctggtggagagacagcctgaggctttt
cacagccaggtggtgccggactacccaacaggcagaccaggcttgggtcaccagcaaagc
agaggcaccaaaactacttcctgagagaatttaatatgtattatttcaaagcaccattca
actagcccatcataggaaatatcagaatttggctggactttctgtacaatttagagttat
tttattttgaattacatgctatctctAAGTAATGCAGCCCTGTGCT
Primer
(+)cacctgccataggagaagggaaaa
(+) agcacagggctgcattactt


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