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Mouse element [ mm2043 ]


Position: chr13:14,983,084-14,988,568 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCCGAGATAGGCTAGCTGATaaggttagggcaggagattctgtgctcagaatttgtgctt
tttggcaagttttaaaataataaagttgtttagtgtttttgatccatgagcaaaggtggg
tagagaaagagagaagccggggcagtagctggtatcgtgaagctagacaggagagtctgg
gagcacaatggcagctccagggaaatcgttgctagcagttggtagagttaagccaggagg
aaggggcaaatccagagcgggagctgacctcagggtgaagccaggagcaagggctgcagt
ccagggagaggcggtagcgtgtttttaaaaattacacgcaacaaagaggcggcaattaaa
atcattgctttaaaccaggccgccgtcctaggccatctacagtataattttccctttttc
cttttcattcatgaaaaagaagggcaagcatttgggcgtgctgactcagaaccatgggga
acacttgaggcagcaataagtgcactagccagaggagatcttctctatatgagggtcatc
cctcccattattgttctgctgaaaagagcagaagatgtcactgtgtgtgctcttctaacc
atttatgtgcctcattctacagaagttctactaaaattccatcacacctagcattactca
gagagtaccctaagttcttataagacacttctgctttcctattccaatgtttccctggtg
ctctgcaattctcttgctgccttacttcctttaccagatgaatcagaagatgataaacat
gacttcactcaaatgacaggtagacttcttttccatatgagagatctattggagaaacct
gtcaaaataaagaattgattttattcactgaaggttcttatttatgtgcagttactgcca
atcttagttgtgactgtgctcatttgccaggaattaaatctgcatggatggctgaactca
tagccttaaccacagcttgccattgagtcaaaagcaaaccagataacatttatacagaca
gtcactaatgcatctagagtcctgcactactatgggatgctgtggagacaaaggagaatt
atgacttctggccagttattttaaaatagtcatcagattacagaattactggatgatatg
catttgcccccacagtagctatcattataatttcaggacattctaaaactaatattttgt
catataatgcaacaaaaagagccacactaaaacagaaccccatgcacaaagagaatctgt
cctgcttattatggccactctatctctgcccttctccttcaggcttaacaaatggcatta
caagaaaaagacatctgataataaggttggaatatcaacttaaaaaataatctgtagctg
agtccaaatggaaagcccaactaaataatatccataagttcccaattggaattagaatac
atatagaatttaactcattggacaccaaaaatgatctcttggtataaactataatttttg
gaacacctcttcaacaatacctcacaagttatattcaatatgtcctatttgtctcaagca
caaccctgataagtcactttgtgggacacaatgtcatttccctttactgaacctgccatt
tgaaacctcacaatttgattctatccaaatgcctccaacacaaaaatgtaaatttttctt
gatgctaatgtgcatatttaaccattggattggagccttccctggtgaggaagccattgc
ctgagctgtaagaataattgtgtcagaaataattactcacacttggagcatttctgttga
attgcatggtgattatggtattcattttactggacaagtatgtaaatgtatctacaaaat
ttggtctattatggaacattttcactgtgcccaccatcttcaatcctaaatggttgagtg
aacaactggcactatgaaaaaattgttgttaaccaaagcttccagtctttcttggccaaa
aggctcctattagctctcataacccttagatctaaccccttttcgaaacatcaagtgtct
ccttttgacatactccttcaatgccctggaagattggatgagggattatatgggccattt
ctgctaaagggagatattatacagtatttcaagggacttaggtagaaattcaatatagta
gcagaatatttctgcagtgagctctagggagttgacaaactagacaaacttaagccaggt
gattttgtgtttggaaaagaaattacaagaaacattcccttcagcttcattgaaaaggac
ctaatcagacacttaaattactttctttgttagagtttttatttcccacatcaaacatac
atcaacttctcctgaggacacatccatatggatttcacaaaggctggatgacactcacct
tcaactgtgttgtcaatcaagagctataagtcactgaactccaaaccctaacccacacag
atgtctgtgtaaatcttccagaaagtttctgagaagcctagaatttagtagaggatattt
ccattagatactaaatacaatcccgttctgaagagtttttaaattatgcctttttcctaa
ccatgctttgttatgcctgtttgcttacccaaatcttgcagtttacttgatatatctctt
catgcttggatatataagatttttttcaatagctccaaatattatatatgtatgtgtaat
agcatatgggtgaattagttaaaccactttggctcccagcgggtcacaagcgcacacccg
cccaaaggttctctggattgtcaaataagagacacatataccagctaattttgatatgtc
ttgtctacctcaacggctgggcatttctaaatttccccatggctaagaaccccctccccc
gatattcttgagttaatatcttttaaaatctacacttcatctctgcttctccagaccaac
tagggaaatggccttaagagccactttcatggattcttacatgttggaaggcctttactg
tcatagcaatcctctgtctctcctttttctccaggccccttgcctgtgcaatctaaaagt
ccttcctccatctttctgcccagccagtgtttgtacggcaattctttattatcagtcaaa
gccatttgggggcaggaaccctcaggtctggaagtgtggttttttgggagccaaaataaa
acaaagcattagaaccaatccccaacataatataatttggattaaaatgaaattttgggg
ttttggatttgcagagtccaaaattaaatctactcaaatcatttctgtttggggttatct
gtattttaaagccacaattcattcaatcaaaatgatcacaattttttccactcaaaaaag
ggaacaaattctaattgggtccaaacaagtatataaatgtgtaaacattaatgttgaaaa
ttataagatataacaaatttttggatataaatccttgtctactgttacctatgccattaa
ttatttgccttgtgaatgtgtctggatattctacaatatgtatcctagccacacttacca
atcacatgaactccaattcatagctatagcttagttccaaatgaggaactctccggcctg
aatggctatgagaagggtccctttggtggttagatttctccctacctaggagtaacttct
attttatcaactcttgtatgggatacccagagattctgtattgactcttttttttatgca
agttgtataaacactaccattctctaatggcaacagcagtcattatagattaattaaaat
tgcccaaattttaaatcccaaggaaatcttattgaaagtacaagttcttagctagaagtc
ctagaacaagataagttccctgaaaatgaagaaaaacattatttagagaaagacttactt
tcaaacacagggtatacagagaagatgctatttcaggaagagggaaaggatgggaaagtc
tttaaaggaaaagtgacatgttatagaaaaggattaaaaacattgaatattatataggga
tactcctaaactaagtaacaggaatgaacctgtatttaatttgataggaattttagacaa
tgttaatacagatagaacctgtgggagttgagaagcaatggacaatgctgcttagtgcag
aggccagagctaatgatctgtggaagtcttatataaaacttgaactatggaaaatgatag
attgagtttgtaacttaagatactatactttaaggatccatgttctctgaataaaagaat
cttccaagtattctatagtactgttaacttggagtgaaaaatactaaatctgttttccta
ccaatgggaggcagatgtttagtattgaaaaatgactgccattggactcccattttactc
tttgatcgtttgctatgaggaatggggaataatcatttgctatgttcacaaaacttatga
aattacgactttccttagtcttgactcttgttagtaccccttttattaatactagttggc
acagtaaaaatgttgatcctgatgagaaggaattcaacatgatattgtgttgttagttga
tttcttctgtaatgtaactgtctacttacttttctaaacagtaatctagtaaaatcttaa
gataatagacaaggtaaattattatccacaaataaaactcacaacaatttagatattaaa
aatcagtctttcttagagttggagcaagccacttcatagaaggtgatagctatgaaatca
aactggccagaagaaagactagaattaaaggacaataaacactttcaaatactcaaaata
tcaaataaaatgttccataaagtacatgactgtagatctagagaggaaaatataccattg
gtctggttaaggaccaatgaagattcatatagagaatcgttttgtgggttaagactccca
ttttccttaatgactgctttcacattctcaggccaaacttcattcttgattatttttatt
tcaaatgcagtaactatactctatgttgcatatacatgctatgtcagaggcagagggtga
ggaaaaagagaaaaagtaagatctggataatgatggctcctgcagactgatgtttttatt
gtctatgactcaacctcacctttatcagatactaggaatgtgtcttcctagctacaaggg
atcttataatattgaataaataatatgttctccattacaaatatatcatgtgatactagt
ccaatatgggtagctatgaatgacaattcctgaaaatcagctatcttcataggctgattg
ataaaatcttcactgacaggagagcttggaatgttgctgatcctagactaaatagagctt
cttttgtgttatctgtatatccctaaaaagccatacactgtatacctctgtatcagtccc
aacatcccaaataaacaaatagacggaacccttgaaatgtattgacttaacaaaacccca
gtttcCAGAAATGACAAAGCTAGCA
Primer
(+)GCCGAGATAGGCTAGCTGAT
(+)TGCTAGCTTTGTCATTTCTG


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