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Mouse element [ mm2041 ]


Position: chr13:14,997,561-15,003,197 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CATGGAAACTGGATAAGGCAattcaactgaagaaaaagagccccgagatcaggcacaaga
atcagcgacccactcattcacacactccgaagtcccatcactacagtaagctaatagcta
taatacatatgcaaaggacctggtatggatccatgtaggccctgtgcttgctgtttcaat
ctctgtgagtttataagccttgcttagatgaaaaagtctattttttttaatattttttat
tattatgtattttcctcaattacatttagaatgctatcccaaaagtcccccataccctcc
cccccactcccctacccccccccccactcccactttttggccctggcattcccctgtact
ggggcatataaagtttgcatgtccaatgggcctctcttgccagtgatggccgactaggcc
atcttttgatacatatgcagctagagtcaagagctccggggtactggttagttcatattg
ttgttgtacctacagggttgcagatctctttagctccttggatactttctctagctcctc
caaaaagtctatttcaataaaaattaaagttatttaaaaataaatggcaaacattccttt
tattttgtgagttatgtcttcatttgattgacagtttccttccttatatggaagttttta
gtttcatgacatcccatctactagccattcttgcttcccgagttaatggaattttactca
gaaagtccatacctgtgtgtagaaataagttgcaccatgtcccctactttttcctctagc
agtttcaaggctttagctcttattttgaggggcttaatctatgtgcagttgagtttggtg
aagagtgagaggtaaggatctaccttctttttttttttaacacatagaaatccagttttc
catttttttatatctttttcaacaattatgtaagtgtagttggtggaattgtaactgggt
tatgtattctgttccaatgtcttatgtgtcagttttgttcaaaactgtatggttctgtac
tataatttcaaattaggtatggtgatgcctcctgcagaactccttttattcaggatggct
tcagatatacgtagtcttggtgtaaattgtacctttatataaatctttggatttttctgt
tctgtttgtgaagatttgtgtggaatttttattgatattgtactgaatctgtagatagtt
tttggtacgaggatcatttttactaggtgagtatttttggtgcatcggcattggagttct
ttccccctttcttcaatgtcataatattttaattgcagaggtcttctgtttccttggcta
ggtttatcccaagacatgttcattgctctgtgtgtgtgtgtgtgtgtgtgtgtgtattag
tgggtttatcctgtcaccatatttgtcattggcatataggaaagcttctgatttgtgtgt
gtgttaagtttgtatgctagtattttgataaatgtgcttttcaattccaaaaggattttt
gtttgtttgttttatggttttgggatttttttgtagtctttaagatcttttatgcatagt
aggatcatatcatctgcaaaaagcatagtttggcatcttattttcctattgtatccattt
atttatttatttattttccttctcttattgttctatgtaaaagccaaccattatatttaa
ttgatgggtaaagagtggttacgttcctttttcttgatcatagggaatgttttgagtttt
tctccgtttatcgtgagtttgatgatagatttcttacttgtagttttgaatgttcagtca
tgcttcctccatctcctatgtcatcaagacttttaacatggaaaatatcagagttgtttc
atgtgaaggtattgctttattgagattttttaaaatcagcatgcatcagggaggtgactc
tataatctctctctctttctctctctctctctctctctctctctctctctctctctctct
ctctctctctctctctccttctctccctccctccctcccctcctctctccccttccccac
ctctctgtgtatgtgtgtatgtttatttgtttttttgattagtataactttgacttcata
aaaagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagata
ggagactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaata
accccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaa
tggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatca
aaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtg
acagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagt
gcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatag
tactactggaggatccagcaatacctctcctgggcatatatccagaagatgccccaactg
gtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagct
ggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctaca
caatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatgga
tggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaata
tgtactcactgataagtggatattagccccaaacctaggatacccaagatataagatata
atttgctaaacacatgaaactcaagaagaatgaagactgaagtgtggacactatgcccct
ccttagatttgggaacaaaacacccatggaaggagttacagagagaaagtttggagctga
gatgaaaggatggaccatgtagagactgccatatccagggatccaccccataatcagcat
ccaaacgctgacaccattgcatacactagcaagattttattgaaaggacccagatgtagc
tgtctcttgtgagactatgccggggcctagcaaacacagaagtggatgctcacagtcagc
taatggatggatcatagggctcccaatggaggagctagagaaagtagccaaggagctaaa
gggatctgcaaccctataggtggaacaacattatgaactaaccagtaccccggagctctt
gactctagctgcatatatatcaaaagatggcctagtcggccatcactggaaagagaggcc
cattggaattgcaaactttatatgccccagtacaggggaacaccagggccaaaaaggggg
agtgggtgggcaggggagtgggggtgggtggatatggaggacttttggtatagcattgga
aatgtaaatgagctaaatacctaataaaaaatggaaaaaaaaaaaagaaaaaaagaaacc
ctaaaaaaaaaaaaaaaagtattttgaatcctttattcccttttatattttatgcaacaa
cttgagtactattgttgttagttctttgatgttcagttttagttctccactgaattcatc
tggctctgggctgactgcttttggggaatctttaactattggcccatcctcacttaatta
ttcatctatttcaattatttattttatcttgttttaattttggtcatacacacacacaca
cacacacacacatgcatctagaacttcatctttttctttttaagatttccaatttaatgg
aatacaggttttcaaaggaagtcttcataatttcattttatttcttttgtatctcttgta
atgtctctatttttatttctaattttattaaattgggtcttcttgtgcctcctttggatt
tatatggccaaggattttttttaaaaaaaggattttcaaagaacaaactctttatttaat
ttttttaattgtttttatttctatttcatcaatttctaacatggtttttacttttttaaa
tttcatttattattctttcatccattacatatctaccgcagcttccccttcttacactcc
tcccagttccatgtcttcccttcttcccacatccactcccattcttttacttgcagaaaa
gagcaggcctcctagggacatcaactgtacatggcacaacaaggaacaataagaccaggc
acaaaccctcacatcaagtattggtgaagcaactcagtaggagaaaaagtgttctgagac
caagtaaaagagtcagggacagcccactgtcaggagtccaccctcctaacaccaagccaa
caagcataacatatattcagaagacctagcatagacccatgcaggctctgctattgctac
tttagtctctgtgagttcccatgaaccctgcttagttggtctcacagaccttgctctctg
gcatccttgatcatctcgcttccacaattccttcctacctcttctataaggttctcaagc
tctaaaggaagggactggatagaaacctccaacctaggttctctctccatctgttgtttg
actgtgggccttctcatctgctcccatcagctgctggatgcagcctctctgatgatgact
ggactaggcaccaatctatgagtacggtagagcattgtaatgagtatttgtttatttata
tatttattcatttatttagccagtcatgtttggttctaccctaggtctccgggctatcca
gtctcaagttcctggtcatccaagcaggggatgaccatgggctccctctcatggtttgtg
tttcaaattagaccagtaataactggtctaataactggtctaatttggttggccacttcc
acatgttatgtactcccattgccctagcacgtctttcagtcaggacagattgtatgttga
agattttgtggctgggttggtgtccagttccaccactggaaatattacctggttagagaa
gataggttgttaaggctctgtattctccataactaagaattgttatggtttggtattctg
cttgtattgtaatgctaaatattggtccaccaaggcctggttggccccagggaggaggga
gtctgcacatacccaagtgacatactcaagtgacactatgcaaccttgttccccaagtta
tccctgattggtgaataaagaagcctatagctaatagctgtaaagaagagagataagcga
ggttcttgggttcccagtcttggggtccgaggtgaaccacaggagtgagagaagggggaa
agaagcaagacactatgggttaggtgagtcaaaaaggatggccatgagggctggaagatt
gaagttgagagcatttcagatgtaacataggcaattgctggggtacagctttgacataag
tcagggttgtgaaggtctagggatacctcttaggcaaatgagaaaacacaaaattgagat
acaatactgacaggcagttcttgcagtgggagttcctgaactcaagagtcagagtgctct
acagacttgactcaaccccagttttttattgaaatcaCACAAGGAAGTTGGGTTACA
Primer
(+)CATGGAAACTGGATAAGGCA
(+)TGTAACCCAACTTCCTTGTG


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