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Mouse element [ mm2038 ]


Position: chr13:15,066,908-15,071,850 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCCAGACTAACCAGAGAGCacagagacagtatccaaattaacaaaagtcagaaatgaaa
gggaaacataacaatagaaactgaggtaattgaaaataccatcagatcctactacaaaag
cctatactcaacaataatggaaaatatggataaaatagacaaattgccagaaagattcca
ggtaccaaagttaaatcaggatcagataaaccatctaaacagtcccctaacacctaaaga
aatagaagcagtcagtaaaagtcttccaacaacaacaacaacaacaaaatctatcagacc
ttcaaagaagacctaatacaactattcttcaaattattccacacaaaagaaaaagaagga
acactaccaacttcattctatgaatccacaattatgcttatatctaaaccacataaagac
gtaaaaagaatgagaagttcagaccaattttgcttatgactatcgttgcaaaatactcaa
taaaattcttgcaaacaaacacagaagtggatgctcacagtcagctaatggatggatcat
agggctcccaatggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
ataggtggaacaacattatgagctaaccagtaccccggagctcttgactctagctgcata
tatatcaaaagatggcctagtcggccatcactggaaagagaggcccattggacttgcaaa
ctttatatgccccagtacaggggaattccagggccaaaaagggggagtgggtgggcaggg
gagtgggggtgggtggatatgggggacttttggtatagcattggaaatgtaaatgagtta
aatacctaataaaaaatggaaaaaaaaaaaaaagaaattacattaaaaaaaaaaattctt
gcaaacagaatccaagaacacatcaaaacaatcatcctttattatcaaatagtcttcttc
ccatgaatgcaggggtagttcaatatatggaattccatcaacataatccactatataaac
aaactcaaagaaaaacaccacatgaccatctcattagatgctgagaaagcatttaacaaa
atcgaacaccccttcatggtaaaaatcttggaaagatcaggaattcaaggcccataccta
aacatagtaaaagcaatatacaccaaaccagtagctaacatcaaactaaatggagataaa
cttgaagcaatcccacacgaatcaaggactagacaaggctgcccactctctccctaccta
ttcaaagtcttagtcaaagcaattagacaacaaaagatggtcaagggacacaaatttgaa
agaaagaaatcaaaatatcactacctgcagatgatatgatagtatacttaagtgaccccc
aaatttcaccaaagaactactaaagctgataaaccacttcagcacagtgactggatataa
aattaactctaaaaaagcagtaatgttcctctactcaaagaataaacaggctgagaaaga
aattagaaaaatgacacccttcacaatagtcacggataacataaaacaacttggtgtgac
tctaaccaagcaagtgaaagatcagtttgacaagaacttcaagtcactgaagacagaaat
ggaagatctcagaagatgggaaggtctcccatgctcatggattggcaggattaatatagt
aaaaatggccatctagctgaaaggattctacagattcaatgtaatacctattaaaattcc
aactcaattctttatagagttagaaagaacaatttgcaaattcatttggtaaaacaataa
aacccaggatagtaaaactattctcaacaataaaggaacttctggggatttcagcatccc
agacttcaagctgtattacagagcaatcatgataaaaactgcatggtattggtacagagg
caggcaggaagatcaatggtatagaactgaagacccagaaatgaaccacacatctatggt
cacttgagctttgacaaaggagctaaaaccattcagtggaataaggacagcattttcagc
aaatggtgctgattcaattggggatcagcatgtagaagaatgcaaattgatccatttttg
tcaccttgtacaaagttcaagtccaagtggaccaagaacctccacatcaaatcagataca
ctgaaactagtagaagagaaactggggaagagcctcaaagacatcttaaacaccaatgac
ttatgctctacaatcaagaattgacaaatgggacctcataaaaatgcaaatcttctgtaa
ggcacaggacactgtcaatacaacaaaatggcaatcaacatattggggaaagatctgtat
ccattctacctctggtagagggttaatatgcaatatctacgatgaactcatgaagttaga
ctccagaaaatcaaataaccctattaaaaatggggtacaaagctaaacaaagaattctca
agtgagaaattcaaatggctgagaagcacctaaacaaatattccagggaaatgcaaatca
aaacaactctgagattccacctcacaccagtcagaatggctaagataaaaaactcaggtg
acagcaaatgctggcaaggatgtggagaaagcagaacactcctccattgctggtgggatt
gctagctaatacaaacactttggaaatcagtctgtcaattcctcaaaaaattagacatag
tactacctgaggacccaaccataccactcctgggtatatactcaaaaaatgctccaacat
ataataaggacgcatgctccactatgtttttagcagtcttattgatagtagccagaggct
ggaaagattccagatgtccttcaactgaggaatggatacagaaaatatggtacatttaca
taacggagtactactcagctattaaaaataatgactccatgaaattcttatgcaaatgat
agaacaagaaaatatcatcctgagtgacataacccaataacaaaagaacacacatgacgt
acactcactgataagtggatattagtcctatctcttgcaagaccctagataccattcaca
gaccacatgaagctcaagaagaaggaagaacaaagtgtgggtgctttggtccttcttaga
aagcggaaccaaatactcatggaagccaatacagagacaaagtatggagcagagactgaa
ggaaaggccatttagagactaccctacctggggacttatcccatatatagtcaccaaagg
cagacacatgtggatccctgaagtacatgctgcagaaacttgatatacctgtttcctgag
aggctctgccaaagcctgacaaatacagaggcagatactcacagccaatcattgaactga
tcacagggttcccagtgtaggagttactgaaaggactgaaggagctgaaggtgtttgcaa
ccccataggaagaataacaatatcaaccaaccaaacccctcagagctcccagggactaaa
ccatcaaccaaggataacacatggaaggacccttggctccagctgcatatgtaacagagg
atggcattgttgggcatcaatgggagaagagactcttactcctgtgtgggttcaattttc
cagtgttagcaaatgccagggtggggagttgggaatgagtggatgggtgtgggaaaaccc
tcatagaaacagggataggaggtatgagatagggaattgctgggagggggaattggttaa
ggggataacatttgaaatataagtatagaaaatatccaataaaaaattgaaaggaaactg
ggaaagggagaaagacattacacaataggagaaggtggagggaggatacagagaagatat
atgaggtgaagctgttcaaaatatttagttgatttttaaagatactttccttttaaaaac
tatatatatgcatattatatgtataatataatgaagatattccaataagaaataaaatct
ctaaactttaaaaatagagaggctgtgaattaagtatggggagattcagtggcagttctc
tgtctacatgaacatgttcattcaacactacctttcaatgacatatcttgtgcctgcatt
ggttttcccttagagttgaagttaccctttattagaaacttctatagaacattggtgtaa
taaaataatggttaatattataatgaggttttaaataaatatatagaagaaatgtaattt
tctaactaatggccacaatgattccattaggacttattccatgttaccttcagatggcaa
agtaaatacatgaaaggggaaaatgaagtgtcttatcaaagtgaccgcccagttcagctt
gcattttgtattttttaggttacagtataaggatctggcaaattaagacattttctctgg
tacaagattgtgagtcaagtgatcaaaagcagcccaagaaaatcccgtgtcctaaagctg
ctgaaaatagtcccatccctcttccttatgtgggcccttaaggtgtttagccagccctaa
tgtttatctgtctccagtcctcttttctgagaaaaagaaaacacttgggagctcagccta
tgctagagcatctcttgggagcttagcctgtattagagaatctcttggaagcacggcctc
tgctagagtgtctcttaggagctcagcctttgctagagacgctcttgggagctcagtctc
tgctgcagcatctcttaggagctcagtctgtgctagagcacctctccagtttagtcttga
cactgttttacttggcataacctcataaaattgccaacaaaaccaaaatttacaatggct
tccacatgtgtatatgtgcgattctgggtccagaagagtaggagttagaacaagaagaaa
gaaatgccatataaaacatctgagtcattctgacctgtgttcatatgagtggcacatttg
tctTTTCTCCGACCATTTACAGG
Primer
(+)AGCCAGACTAACCAGAGAGC
(+)CCTGTAAATGGTCGGAGAAA


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