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Mouse element [ mm2037 ]


Position: chr13:15,096,783-15,101,504 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTGATCCATCCATTAGCTGactgtgagcatccacttctgtgtttgctaggccccggcat
agtctcacaagagacagctacatctgggtcctttcaataaaatcttgctagtgtatgcaa
tggtgtcagcgtttggatgctgattatggggtggatccctggatatggcagtctctacat
ggtccatcctttcatctcagctccaaactttgtctctgtaactccttccaagggtatttt
gtccccacttctaaggaggggcatagtgtccacgcttcagtcttcatttttcttgagttt
catgtgtttagcaaattgtatcttatatcttgggtatcctaggttttgggctaatatcca
cttatcagtgagtacatattgtgtgagttcctttgtgaatgtgttacctcactcaggatg
atgacctccaggtccatccatttggctaggaatttcataaattcattctttttaatagct
aagtagtactccattgtgtagatgtaccacattttctgtatccattcctatttgagtgtt
aacccatggtttccagtcagtgacaaagttccttttaagggagtgtgaaactgaaggaga
aaaagagggtttcatttggctcactgcaggcttgtcctgccaactatgttttctgcaaca
gtgttttgttgtttttgttttattttggtttggtgtgagaagcatagttctctaatttct
taggctctctttttctacgatttgactattcaacactccaccatatttagagataatatt
caagggaaatgaaaaaggatttaccacacctgagcacctacttttgttttattccctctc
actgataagaactttatttttacagtcatccattcattttatagagtgctaggatccata
aagacagtctgactctttcaagtaaattatgtactttgaacatcttaatatccaaattat
ttacttcctgtagccctctactccattcccctcctgctataaatttacatatataagcat
atacacataaacatagatgcatataaatacatgttgtgtgtattatatatatgtacatat
gtatggttttagatatctatataaatctatgtaaatctagaatctacattttgcaagttt
aagaaaatgtttctgtacttctgtttcctctttgacccaaagtggcaaataggccattag
aaattaatgtgctggctcaggattgtgttcatgcctgtaatccacgtaccccagagtctg
aagaagaattgtgagttataggcagcttgggctatatagtgaaactctagctcaagaaaa
agtacattgtttaagttgcttcataccaagtgcttaataaaaagtggaaaatcaccataa
ttaaattaaaaatatatgtgaaaggttcatacctaccatttgtttgaccacctccaactt
gctttagaaatccaagcagactctttttcacacattctattcatccattaataggaaaat
tcttgtatttacttgatgttcttaaagctctctggctactacagctgtttgcaacacact
tggaatctttttcttaaacagaaaagagatcatgatagcttcctcctgcatttggagccc
agcagaactatccttgaatgctggaaacagtggtggtgagcactatcatcatgtactaga
ctgactcattatgctttaaaaatgtccagagaagggaagatggctctatgggtaagactt
cttatgcaaaagttggtgactaacatggtaaaggagaaaactcttgctctattcaagagc
agtggcacccctttctgtctcttatccttgcactccctgtctccctacatctatctctcc
cctggcacatacacatacacacacacatacacacacacacacacacacacacacacacac
acacacacgaataaatattaatttaaaaagaacatttcacaattttattgttggtgttca
tacctcacattcttcatataatgactcttgctatgaagtccttatcaacctatgtgattt
caaagagaaactcataaaaaaattaagttaatattatttattcattatcctagtagatga
ccaaaatttgaagggttctgtctttccttttattctttaaactagatcagaattcctctt
ctcttctcagaactattgttaaaacaataatagtaagagtatcaatgactttttacttaa
catagcaaccagtaagcaagctagacaatttccagggacctctaagtgctactaatgcat
tgctatcattcagcaagcaaggtgtctgccgtttgcaatacaccaagtatcaacacacac
acacacacaattagtgtgaacagactatcatgaaacaccattcattgtcaaccttcaatt
ttagagctctatgagacttaattgctaagatttcagttcataaaattccaagttaaaatt
gaaaatatacctccttgctctctttcaaattcatagcttctttttcattaattattatta
catttatatgtatatgcacatacagatatattcctaatacataaatacaacctagttagt
ctgtatattacttgcatatatgttttcagggatgaccattctgtattagatagccagttg
gtcttattttccctgggaaagactattttcccatttctagcattctttagctctctgtag
ctatttttatggagttgaagcctcctggcctttacctcatccacattagcatctctattg
atgttttaattgttcagctcatttttagacagtcatgttggtgagactttatatgtatag
ctcctgaaacccctaggagacacacttcagagcaaactccctgttcttctggaccttgcg
atctcgtttccttaattcttctgcaatgatgcctgatccataggttcaggagttgtgagc
attatatgggaggatttagagagaggaaaaggaattggaaattatgtaactttattatga
tctcaaaaagtaaaaagaaaaaaataattttaaaactataagtacactttagcttgaaaa
tgatgccatattttgtcaatgttgtttcaagaatttgaatcttaaaactatgcaaaatta
taaaactttaaggagtaagtaattatgtatattacatgtctagctaccttactctttgag
acttcaggagacataacacttgacatttgtattttaaaaattctaagaagtaccaataag
ataattgatttacttccattttagtttaccaataaattaaagttgtactgactacttggt
taattggaggatggatgaaagactattggggacatctttctaagtaagactaagttatgg
ggaagaaatataaaatgtaagaagagaacagctttatggtcaatactaatgagatcatcc
aaaaatattgagtggtttcatagtccccttatttggggcccaacttgatttactgataat
atgtattttaaaaacaagaaacatatccaaacctcagctcaacaggaatttaattaacac
tgctgtaaaagtagaagcagggaagtgaaaaccataactcagttgactggaaggttctag
gttgagtatacatgagagccctggggagcattctggaaagaatgcattctcataaaagac
ttgacccctttgatcacccattagaaacagcttttcatatcaaacatgttagaagccatc
aaaactagttcatgagtaggaggagaccatgagatatatcatccatgtatctgaagacca
aacataagattgacaagtgaaacgttctgtagaattgttttctttcttctgcatttcttt
caaagaaaaataaagagctgaagaataaagctttgtggaaagaattcaaaggttttttaa
aatgaaaaacattacaagaattatttttaaacttgggtcttgcttttaaacaaatatgac
acatgccatttaaaaacttcaagatgagagaattaaagaaatatccttgcaattaaaata
gatgatttcaatcttccagtgagtacttaaacatccacaggagcctggggagtaaacgag
gaggttttgttgttgcttatttttagatctcatttgtttttctcctttattccaaaaggg
taactgcaaccattctccaagtccttggtatgtatgaggacctagtctctgcatgttttc
caatttgcttggaataggaaggtgttctctagcagttgaaacagacatctctttcacact
atctgtcaggtcatgttaattaactggatgagcctcaaatactaaacccacaatgactta
tctcttattcttcctggacaaatacccatccattagtgttgccaggggcctctgatctcc
agagttattttaagtagccaccatctagatcttagaaacagagatatcctgtataaagag
agctctggaatgacttccaatgaaatgcttagccctaaaccaatccacaagaaacattgg
ccaaaaagagtcacattaattagaaggtacaatgttactatgcaccagaaatatctgtaa
aatcatgttaagcatgagcatatgtgtagctgtacacctacacaaattattctgggcccg
gtcttcatttttccctagtataagtcagtacatcaattctgaaaacacttagactatagc
atgtgatattattttgtctcctTCTACCTCTTTGTCATCAGA
Primer
(+)TGTGATCCATCCATTAGCTG
(+)TCTGATGACAAAGAGGTAGA


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