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Mouse element [ mm2036 ]


Position: chr13:15,109,656-15,114,527 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAAAATTCAGCCAACCTCTCagagctagtgaggtaatggaccttaataaagaaccgacta
ctgccactttatcaaccagaatctttgataactctaatctaactatttattcttagacca
aagataagtaaagttcttgcccatcaacaaataaagttctttttaaaacagctggtaacc
attacagaagaccacaactgttcatactacagaggacaagtgattatgtgttcccatttc
aattaatatatctacagcacaactcctgaatctaaggcttagggaacatggcaaaagagt
gatggaaagacaataaagggcatagggtgtggaaatctgctgtgagattgtgtctcctgg
aaggcgtcactggtatacctcaacaatatgactgccaaaatgaaacttgagcaagtacaa
taataatagacaccctaaagtgaaaggggaaaaatcttaggaggcctcacctctaaacaa
agagctacagaaaactaaatgctgagagtagaagtaatacttttttttttaaggatcagt
acactagttattgaatctcaaggggtcagctctaaatgtatatgtatatatgatgatgga
tatgcacatgtatatgtgtatgcacatgtgtatgtatatatatatatatgtatatatata
tatatatatatatatatggactgagaagattttatttatgtaggtaaagctttttatttg
cgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtacgtaataataattaggaaaaagag
gcaataaatttgagaaactggttgtaaggaggaaagggaaggaaggaatgacgtaattat
gttttaatttaaaaaataaaagtaattgtaaatcatgaaaagtcaaaaagaactataaaa
aggaaagaaaagaagaaaataaaaatagttggtatgtctatataccaacaagagagttgg
catgatgaccatcatatcctcaaatatagccaaatctggaactgtttttatttttctcct
ttctactaacttacaaagccaatgctgaagacaattttagatagtaggcaatacaaaata
agtagttgataaataggtcatcattgcttagcctgggttagagtcaaatattgaaataaa
ttgtaaaaagatacttattgtagaaaagagatgttgacattagacctaaagaactaatgt
cacaggataggtgagtgacagaaggtttcagagtagaatatgcttaaatgcagctcaagg
agataattttatgggtaaagggggtaaccaccaaatctgacaactaaattcaagccctag
gatccactgatggcaggggatcactgattcctgcggtgacatgtgtgcccatacatacat
acatacatacatacatacatacatacaggcaagcacaaaaaataagtaaataacaataat
aattattttaaatgtttaaataacctatatttaggagtactggctttaagcttccggaga
tgttccaagaggaatttgggacagatgatgaatctgctccctgtatcagctcctgctttc
agataacagtgaattagatggttgagttgttcccggccctctgcctgccgcatcagaagc
ctgtggtgccatggctgacctgaatgactcccagcgcatttgctatcttgagaatctgtt
tttcttctctttaaacaagcttctctaagacatgggaggtatctgtttcctgactgtctc
actgaaaatgttcatggatgtgagcctgcaaggacttgcaaatttcctctctctgatcta
tgagacaaggaaaaataaattctccaagcagagggaggtgagctgcctgacagagaggat
ttgtggtgggagacacccagaggttactagatgcaacgtaaaagtctggcttttattcct
cttagtcttatccttgaggaacagccagcaaccctgaggattttattcccatcctcagat
ggcattaatgctttcaaaaccaacgcaggtcaaacaccttcctcccgctttctgacttac
ataatcccagataccctgaaacacttacccacgcattagagagcgaaccttcttcctgaa
cggctgttctccagcgtggctaataaacagccagcacaccagccccagaaacccgtttaa
ccatgtcatccgggacttagaaactggctgcaaaaacagtgagctgagttgtttccaaga
gcctgcaaaccaaatgctgggagcagacgcctgggatcgcttggcaaaagtcatttgcag
agcttgcttgtggtctgaggccagcgctttgataagcatttagaagagccactattacta
aggagaactactaggcagctgcctgtctggattttgccccaagaggtcaggagaaggctg
ctctgttatggaagataccaggggatttgcatagggtcaccatgacaaagcaaacacaag
tcaggtgctattctcagcgcatcaagagctctgcagtcccatgtgccatatactcaggaa
ggctagctgcaggacctgaccctatgtgtatcatgaatctccaagcaagagtgattttca
gaatttaagtgtagtcagctacggcactttgataaagacttaggaagggtcctgttacta
taaagaaccaccaggtaggtgcccaggctggatctgaccccaggagatgtgtgtgctcgg
attctgcatgctcagccagtgttttggagtccaaatgatctattggacagacccatgcag
gttcctcctcttttggtcgattacagaatccaaaagaaaggctctgtatgtgcacaagat
agcaaacaggaaactgtttaattcctgttcacactctagccagcagcaaactccccttag
gaatgatgctcaaagaatgagctcctctagagggaaggagtctgagagtaaaaaggatca
caggactgatcgctcttggaacaagacaaatgtaccaccttcagacaacatggctcaagg
actcctactttaatcacataacaccccacacacacacatacacacacacacacacacaca
cacacacacacacacacacacacacaaaaatccaaacaaaccgaaaaccaaaaaaaaacc
tctttagtacatagtctaagttcttagaatgatgttagaggcccttcatatttggtcccc
ttacccttttgcaatctatctggttgttcccagcctcataagctaccacatcatcagtgt
agccccagggctctctctattctccctcttggcctttcttttcttttacatctaacaggg
tcagagtcttttcctctcacccccagtatctcctcaccttaaacatattagcactgatga
cccttcagtgggggacccttctttgaacagtactctcgacttcaaaagtaagatagcctc
ctcagtcctctgttttatactgtacctatctgaatggttctgttgtcatgctgttaatct
ttttttaacactgtgataaaaatacattgcacgaacactataagggaggaaagctgtgtt
ttggcctttttgctctatcatgatggggaaggcatggctaacaagagcaactcacagcat
gatgtcaggtgaagggggaggatgtgaaaggaagataggcaaggatggaatcacaggtaa
tgggggatttctatgtgggatacaagcttataagagtgatgcccagattcagggaaggtc
ttctctctgaaagctctcacagacccctccctaagggcactttgctaatagcctagggta
cacctcaatacaaacaagttgataatcaatacaaacccaacaaccaaacataccttgctc
taatatctattagaccagaagctatatgaaggtaactataattgtatttgtctctgtctt
tcacatacctgaaaactagaaagaacacagggaaaactgtctccttcaatgtaagaaata
aatgagtatacggcccttgcttggctccattggttggctgggattgcactagcctctgca
cctgctgcttgtctgtgtctctgggtagtctacaaatggtgctaacagatatcttatact
tcttttcacactgatgactggttctagcaaaacagctgccccattcctatgggggcctta
tgtcaggccctggccttttagtctggttaaactgactggcctttctgtgtgacgtctaga
cacctaataattaaagctgtgtagtgatgtaacttgacaataatatgcaagaaacatcct
tgagaatttaattgggagcacattttgtgaatatcttggcactgagctgtaagggcacta
ccatactgaaataatgcaatggtctatagttctgggaaagctcactgagctaaatgcagg
gtcaagtatgggtcaggacatcattcaaagggggaaaaagaacaatcagggaagatctaa
gtcaatctgaaggcaggtaggaaagagggagaatagtagagagtttatagagatgcaaca
gctgtcctcttaaaggctcattagcacagatgggggcctcagaggtgacttgttgagaaa
aaactggtccatgaactctgtaaactacaggcaaaatttcaagtgcatatggatttcttt
tctggaatgagaatttgtaatgcttcttgtttctgacagagatttccaaactattaaaat
ttgagatttgattagaagttaaaattgattaaaatctattaatgacagttctaaattgca
gatcagctggaggaaggatcaggtatgagtcaatattttcagtaggagagaggacagagg
cataggtagaaatgagcttttcatgaacatttactgaagtcaggccatttctGCAAGTTG
CTACAGTGGAAG
Primer
(+)AAAAATTCAGCCAACCTCTC
(+)CTTCCACTGTAGCAACTTGC


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