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Mouse element [ mm2035 ]


Position: chr13:15,868,206-15,872,815 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TACAAAATGACCCTGGCTTTctctattttagaacaaggcagactggttttcttttcctca
cattattatcatcttctctgatggttgttccgatctcctgggagatcatgtttagaaaag
ggacgtcatcctgagctcagcagtaagattgcagtagcgctgatgcctggcactctgggc
cacatgagttcccatgtggtagacatgccttcctgctctcacacagtgatcttctggaat
gttatagagacacattaataggtttgtacatagcatttcaaatatgaatatgaatcatac
actaagaaaatacaggtctgttactaaagataattatggtcattcttaaaaagtaaaaaa
gactagataggaaactatgaaactctgaagtggaggttctcaatcttcctaatgctgtga
ccgttcaacacagttcttcatgttgcagtgactccaattataaaatcatttttgttgcta
ctttgtaactgtagttttattactgttatgaatcataatgtaaatatctgtttttttcca
atggtcttagatgacccatgtgaaaggattctgactcccaggttaggaaacatcgctcga
gagattccatagggggagtgagagaaggcacgaagggaacgggtgccacagggaatgtat
ttgctatttttctatggctgtgataaaacaccgtgaccagggcaactcagaaaaggaaga
gttcatttgggctcaaggttgcagaagattaagagttcgtcaccatcctgatagggaagt
atggcaggtaagcatagtgccttgaactggaagctgagaactcacatcataaaccacagg
aatgaaacagagtgaattaggaatggcaaatagcatttgaaatctaaaagcccaccctga
gtgagtaacatatgtcctcctggaaggccacccctcctaaatctacccaaacagtacagc
cagctacagagccaagtgtttaaagagctgattctatgggatgggcgattctcactcaag
ccagcagaggaagaagcagggagaacacaaatgagaccactggaacctacatgaagctat
tataagaagcctttaagataactcataaggtcacaaaaggggaaaaaatgaagtagcttg
agataattgaaccatcacacctagaatataatcaccagataacgtgacacactaggagat
atttttgtaaggaagtaggcattcattttctcagaggagattagcccttgatctgttttg
aatgctttttataggtttggtctatgacttgaagaagtcacatccctttgtccccagccc
atcaaaataccaaggttactgatctcggtaagctgctgagtaagccaggcctcgcctgta
atcctcccccaggtctgctcttcccaaaccgtgtttttgactcatcccagcccttctgag
tgagcctgggggtgagtgggtggtgacagtgagtggaaagtttgaaaattctcagaatca
tgtttcctgaggcattcaccaaggaaataggaagttgtatacttcactgggttgtgtctc
cagtttacgaatacacgtcttctctcatccaggaagggtttactcatcgctttgtgatat
ctgaaaaaagccagtgatgagtctgcctgaaatacagttgttccgtctagttcttcatca
ctgctgacacagttgtctgcttctacctgcatttactttacacgtggaagagtacaaatg
agtggagggaaatgagttacttccatgaccatatttggaatcattcttcacaagctaaga
gacacacattatactaagaaccccaaatcctagtgaaaatctaatacttgctacccaatt
ttgtttcctttaattcagaatattggaaaggttctgtagaaaatgatcataacagctaat
atttaccaaattctcattcttagtaaataagtactttacatatatcaactcacttagtgc
actcattctattctttagaataaattctattctatcatgttaatagatgagagtctgagc
catgctaattattcaagctaattattatgtattacataaatattgtgaaactctgaaaga
tgggaaacataattactataaatattctattattatctactcaataaataaataccaaca
ttgcttttttctagacaagaaagtgaaactcattttctcagtgtgatagttaatgtaaat
tgtcaacttgacagggtctagagtcacctaagtgacaagtctccagatacacttgtgagg
gattgtttttagtctgcgagatttggggcatgtatttgaagggttaccttcatcacctta
atctaagcaggaagatccatcctaaagaacagtggcctaattccttgggcttggggcctg
aactgaataaaaacaaggaccatggctgaacacgaactcccagctctctctgctctctga
ctgtggatgtagcatgacaagatgccccaaactcctgccacaaagtccacaggatggata
ttatcctagaactgtgagccacagcaagccatttctacttcaagttgatttagttaggat
attatcatagtaacaagacaagaaactaagagaactggcaccaagaaatggggccattgc
cccaattgacctgattatgtggttcttcggcttttgaaagtgttctgtagctggtatatg
gaagaattttgaacttcaggctatattagctccacaaaatttagaacagggcttaagagg
acattctggtggaagtctgaaagacaagactgatgtgagtgcagatagtgaccactcagg
tcagaggggaacaaggaatctatcaggaattagtacagggctcttgtttgatactttggc
caataatcttcattccacctgtgtcctgagaacttgagagaaagtgaatttaaggataac
agagtaatttgtttggcagaggaaatttcaacacagatgatcattcaggcagtggtatgg
ctccttttactgcatttatctaggtctacactgaacaacaacaataacaacaacaacaaa
aagccaaaagttggacagaaacatgaacaatgtgtggcttgtagaagaaggaaagagcta
gagcaagttaaactacccgcaggtgtgtgctaagagacaggctataactgccagcgagaa
acgtcctgcccttagaggtcccaaggaaaggctgctcactcgcagctctaacttgtgtaa
aacctacacttgtttgaaatgaaagagcttgagctgagaatgcagctaagggaattcact
ggtcttcagcaacgactgcctaggacagtgtttccctgggctcagcacacagaaagtcag
ccaaggggggcaggcaacatctcaaggaatcagtaaacttggtagagttgtccacatggt
tcctgtgtcacagacataaaagatgcaagactgagggagtcgtgggccaccatgttataa
atcattcaaggataggcaaagtagggcagcagtagagtcccagaaggaagccccgagagg
acaatgtgtggtgtgaaggtgaagcctaatttagaacagagactcaagaatcttagtgat
tcccgcacaggactcgtatggaagaaaagctatctgcatggaaaggaactgaatcaagag
agatattgtctatgtagcaaacagcaacgctggggggatggcactaccaaatgcctttgg
agtcctcaggtgtctgttgtaagtcccaggtgctgaacattttccctgcagctgactgtg
ttgatactgacttaagtcttagataatacctggactttggagtttgaaacattagtcatc
ctttacggaatctgatatataattactataaaaattaatgaactatggttcttctttgaa
agccctactctcgtgatcttgttgtgtgtctcattttcttttgagtgcttctcttttgct
acctcttatgtctaagcctatgctatactatcttcatagagctcatgtctatggcataaa
caggctagctcttgcatttttttcttcatcagagcaacaactcatgatctggtttgggat
gagatccgtagtagtctaggggacatccttgggtttctgtgggtgataatatgaagtgtc
tctgtcctccaatgctgacagattcacccagaagacaagcctccaaacacactgtcaaga
ttttttttcagattatgatcgtctttgggcatgctttagcttaagtttgggtgataaaat
ccaccatatacctctatttagactcgtatgacaccatgtcctggttcctagaccacataa
aaagggagaagcttgccaagtgtgggcatccatctctctctgcttgcctgactgtggcta
caaggcaaccagctgcctcaagtttctggagaatgccctggagccaaagtaagccctttc
tccattgcttttgtctgtgtattttattacaacaaggtgataagatacataatgttacat
acatgcagctttaacaagaaggtagctggtctgtgccagcaagatggttctatgggaaaa
gggacttgccaccaagcctgacatctgagtTTGATCCCTGTAACCCACAT
Primer
(+)TACAAAATGACCCTGGCTTT
(+)ATGTGGGTTACAGGGATCAA


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