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Mouse element [ mm2034 ]


Position: chr13:15,863,055-15,868,977 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACCTTACAGTCAGTGCCCCTtatgccatgacattctcaactcatggctataacatgtctt
atctaattgaactgcagagtatgaaactgcagagcattatcttagtagatcacttagcca
caattatatcttgagttgattggacaaccatagcctgggttcctcatgatgaataaatgt
caatgacttttgcaagtgaagttacatcttgactcctgaactcttgatacaatgagcctg
agctcctcaggtttctctagccacaaaatctagtggaaccattacaatgatgattcctct
gttgggattaggacttggggttagatagagcctatgatgggaagtgcaggttccccatcc
aatctctgagaagacagataaacaagagtattgttggtttcttaatttacccttgctttt
tccgatgcaatgtcatgtgggatattgtgtcaacagaataaagatactggtaatagggct
ggctaagaccctacaatcaatacaggcacacctgtacttagaatctatctttgcttcaaa
ttcaggtgagtctctactaactcaaatggtctattgtaattaatatgccaccaaatagac
ctgcgtggtgtctatcaccttcatattggacacagggcagcagcagtaactaattctcaa
ccttggtgctcaggaaaccagctatgtaaaccatcttttttttccttctccatggctctc
aaaccacagttcatgagcccaccaaagtgaatgtgagggggcaatgacaagaagctgtcc
ttaagtcatcctacttatttagctgtttattggctgtccagaggtggctgctttctttgg
gtattaaacaaaacataaaagttaccaggctttgtgtccacctttagctcatccatattt
cttttctatagacatccttcttgctagtattccaagatttctcttttgagggcgataatc
aacaacaaagacattcactagagcacaactcagtagatatcacctcgggtcactttttgt
tataataggagtgacaaggttataacccacagtctgtctattaggaggatttatatctat
ttaactcaggatcaccccccttcaggttggatttcaggatagtctatttccaaattgtac
tttcattttttttactaacccattcgtgaggctaacgtgattactgttttgttaattagt
tatgagaattaggatcagattctaggacaatagaggaggatgacatgagggtctgactgg
catggccatgtattctcacctgactttacagcatgaaggttcaacaacctaggttcatgt
tgaacaattgtggctgcatgataacccacgactctgcccagtaagcagtcccataagcag
cagctattttttaataagtgtgtattctctcctgaggataggacgggcttcattcattta
gataagaatgtaggttttgaattttctataagaacttgtccaaaacatggcaatatggta
tttgtcccatcacaggaaccactagaataatcaattctttgatgtcctggaacccaaata
aatgaaccatttgtactacagtctgaatatattaaaaggccttggtctgctgcaacttaa
gaaacaatgtgatatgattggtgcaaatgtattatgtaaatgagcctcaatcaggcactg
tatgtaggatgtctactaaagactttatctacaaaggtattgttcatcttgacaacaacg
aaacaaacaaacccaaaaaatacaaaaaaaaaaaaaaaaaaagaaagaaagaaaagaact
aactttgttctcttctgttgctatgataaaacactttgacaaaagcaactgaagggacaa
agggttaattgtgactcacagttcaaggtatagcatagaagtcaaggtgttagaagtcca
aggcagagaactaatgaatgcttactgctttttaattctctttttccatgtctgcctgcc
ttcctgcctgccttccttccttccttccttccttccttccttcctgcctgcctgcctgcc
ttcctgcctgcctgccttcctgcctgcctgccttcccgccttcccgccttcttgccttcc
tgtcttccaatgtctttttgattctttgtgagttttccatcatgtattccaatcctactc
acctcccagtcccttcatatctgccattgttatttcctgcacaaaagaaaactaaaacca
agaaacagaacaaaacaacaacaaaaacaagacaaaataaaacataaagaacatctgggc
atggacgctgaagtatcaccatgtgtcacacagtacacccttttgtccatacatcttgca
aatgttcattgtgatgagtcatttgtttagttaaaggcttcttgtatctgacacactata
aatagtgaattctcactgggactcctcttgttgccctgtgtcatggagctttcaaagctt
tatatttttaggaccagccctttcatgcattctagcagttcatagatgaggtggaggttg
gggtaggccaattcaaagccctggatctgggcctgggtggtagctgagttggtcagccca
caagctcttctgcacccacaccactaccataagttctccatcactgccagggctagctta
gccaatgccacagctggcaaggggcagggccagctctcctgctctcctgccctcatggct
ggaacacttgagcccccaccaccagggtcagctacactgtgctggccaggtgagagcagg
acctgctttcaaagtgcagcagctagcaagaaacagggccaactctgcacagctcttgga
catcaacatgattccagcacagaccagaggcatccatatggtctttagtggaaatatgaa
ccatggacattgacacagacccctgctcctaaatggccagcacagaaccagacatggccc
tcagtggcatgttgggtggggacttcactgtgtcctcaagtggcagggcagggtatttct
cttcactctcatgtctccagttctgcctctctttataatgctcaaactgttctacctctg
tttcttttccatttctctaccatattcttgcacatagaagtggctcttgtggcaccagta
acaggcctctgggtgtcctccacttgcctgttccacatgtcctggaggtaggtgggcctc
tcctttctccattctatagtccaggattccatccaggaaacattgccactcaaaaggaga
aggtctttctgcctcagttagcacaatcaaaataatctcctttagatgctcaggtatctt
ccaggtgattctgattattttgaatagataattaatacttactgttataatttaaatccc
aaacacatgacttttaggtcataaccttccactcttgtctcgtagactaatggcaatatt
ataatgtaaaatccagccagtccagcttagaaggtcttcagaatttaacaatttaaaaac
tgtgtggtagttttaatgagaatgtttttataggctcagatatttgagtacttggtcttc
agttggtggcaccgtgtgggtaggtgctgatgccttgctaacggaagcacatcactagaa
gtgggccttgagagtttacagccttgtcattcttccagtttgctctctttgctctctgct
tgagattaatgtgatctctcagtttccttctgccaccatgcctgctacttgctgccatgt
ttgttccctaccatcatggactcttatccctctgaaatcataagctgaaaataagctctt
tcagaagttgattttggtcatgaggttttaacacaacaatgaaaatgtaactaatgcatg
taaaaagcctaaagtctcctaaaagtgagctctgctaaatctaacccaaatacatgcctc
tgacatttaatggcacagataaagcattgctattccaaaatggaagaattatggcataag
aaaaaaaatgtttaagctcaagcaagatgagaatgaattgggttaaaaaaaaatgagtct
tgagctccatgtccaacacctgaggctcaaaatgtaatcagtcaagatccgaaggttttg
ggcatcctcattcctcaagctctgccatttgcagcatacaaatcttacctcaacgcttgg
tgtatgtctcacagaactggatgccctctttggtgtgtgtctcatagaactggaaattcc
aagaacttgaagtctctagtgaaacttagatttcatattcactgttttactcagttgtct
tttgggcctgctttcaggaacattaagcctggcacacatttcctggtttcagctgttctt
catgtcttccttgatcttgaagttttaatacctgcaaaaccattatcacatggacaaaat
tagatactcgattgttaccagtagggcatggagaatatgtgggaggtattgctagttact
gtgtattgctgtgacaaagtagccaagaaaactgtctaaaaaaggaaaaataaaataaaa
tcctaaacctaattttagcctgtggttccagagatttcattccaaggtcacttgacttta
atctttctgggcaatgataaggttggacatcaagtcaagcagcatgtggtagaacagagt
ggatttcctcatggttgcaaggaaggacagaggggtggaatggaggaggggaaggagaag
gagaaagagtgataacatgtatgcgtcaaagtcatgccttagctctttccgctaattagt
ccctcactcctaatagctcatctagctttgaactcaccagggtttaatgcccttatcctt
cagtcacatcacaatggcatctatggtggagtttaagcattcaacatagatgtgtttggg
aatatataactaggtgacagggtttcttatttgagaaaaatattctaaaattgtggtggc
tataaaatttcgagtctactgaatttaaattgaacactataaataggcaaattttgtggt
atgataattatactcccaatatagttggaaaaataataggaagaaaatggataaattgag
tgtctacatcctctccacagaaaagatgagaataaaggcataaatggaactgatgaagca
gtaattggcaagtctgtcatgtttgttgactgcagatatgcagtgttttgttacaaaatg
accctggctttctctattttagaacaaggcagactggttttcttttcctcacattattat
catcttctctgatggttgttccgatctcctgggagatcatgtttagaaaagggacgtcat
cctgagctcagcagtaagattgcagtagcgctgatgcctggcactctgggccacatgagt
tcccatgtggtagacatgccttcctgctctcacacagtgatcttctggaatgttatagag
acacattaataggtttgtacatagcatttcaaatatgaatatgaatcatacactaagaaa
atacaggtctgttactaaagataattatggtcattcttaaaaagtaaaaaagactagata
ggaaactatgaaactctgaagtggaggttctcaatcttcctaatgctgtgaccgttcaac
acagttcttcatgttgcagtgactccaattataaaatcatttttgttgctactttgtaac
tgtagttttattactgttatgaatcataatgtaaatatctgtttttttccaatggtctta
gatgacccatgtgaaaggattctgactcccaggttaggaaacatcgctcgagagattcca
tagggggagtgagagaaggcacgaagggaacgggtgccacagggaatgtatttgctattt
ttctatggctgtgataaaacaccgtgaccagggcaactcagaaaaggaagagttcatttg
ggctcaaggttgcagaagattaaGAGTTCGTCACCATCCTGAT
Primer
(+)ACCTTACAGTCAGTGCCCCT
(+)ATCAGGATGGTGACGAACTC


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