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Mouse element [ mm2033 ]


Position: chr13:15,858,225-15,863,372 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGTTTCTATTCCTGCACAGacatcatggccaagaagcaatatggggagggaagggttta
ttcagtttacacttccacattgctgttcatcaccagaggaagtcaggactggaactcaag
caggtcaggaagcaggagctgatgcagagtccatgaagggatgttacttactggcttgct
tcccctggtttgttcatcttgctttcttatagaacctagaattaccagctcagggatggc
accacccacaataggccctctgacccttgatcactaattgagaaaattcctcacagctgg
atctcatggaggcatttcctcaaggaaggctcctttctatatgataactccagtttgtgt
caagttgacacaaaaccagccaatacactggccaaagctatcttatgtctaggactcaga
aaaatcaaatcaaatacaggcagcacagcataggaggaggaagacagacagacacctgtg
gactaccatgccacccacagatctgccctctagcacaggcccatagcactcacttgctgc
cacatcatacagcacaaataaaggacatccccacgggcctatcagccacatgactagccg
gcagtgagagcccccacaatgggcaagtatgtagtagtcagatcatagagagagacaaca
ggagcagcttgtgtgttataaagagagatgaaactggtgactcaagcctgaagagtagcc
tgagtggtgaaccctgccacctggggcctatggtgaggtcctagcctgagctactgttga
ggaccatgtctgagtctgtggctatgtagccacagactgggattgttgtcatggctccat
ggctcatattactacaagagaacatggggatgtctctggttgggattgctgccagggacc
acattgaatgtccaaaggctgtgtgtgcataactggccccatccctcactggataaggca
ctctggagagctgaccccatctcttactgcctgaaaaacttgagaaaggaagccctgcac
ctgtcccaggcagcaaagtggaactggttttggtgtttggggtgtgggtgagtcagccct
aagagtgtgagcatgggagagctgacccgccactcatttaccatggggtggcatgggtgc
agatatgatgaccccccactgctcaccacctttggcacttgggacagctgcccacagagt
catgagatcagaagctgtccctcaccagctgtagtatcctagtagtgaggaattcacgtg
aaccagcggtgagagcaagagcatgggagagcttgtcccaccactcctctgttgtggggt
gatgtgggtataaaagtgatgcctccccccaccccccacctcttgccatgttgggtagtt
gggagagatggctctggaccatgagagcaggtggtttggccttgtccctcactggctaca
gcacttgggagagtgatccttgcaccttacctgggcagcacagtagagttggccctggtg
gattgagagcaggtgagttagccctgaaggtgagagtgcaggagagctggttctgccact
cctctgccatgaggtggcttggtgggtgacaccctctgcccccttagccctcgacacatg
agtcagttgggagagctgaccccagagaaatgagagtgggagagctagtcctgccccctt
attggctgtagcactttgagagagcatgttctttacattgcctgggccatacagtggagt
tggtcctgatgatgaaggcagggttgagcggtcctgagggtgtgggagcagcagagctgc
cccagctcctcatagagtgcaatacttggggggttggaccctgaacctctactggacagc
acagtggacttggctctggaggtgtgggtgctggagagctggccctgaagaaggcatgta
agcagaagagctgaccctgcctcctgttgatggcagcactgggcaggctaactggggcaa
tgctggagaacttgctctggtcgtgtggataaaggagagatggtgggctgaccagctcag
ctaccacccaggcctagatccagggctctcaattagcccatctcaaaatatttatcatct
tcaaatgattgggatctgtgaaaaggacagtcctgctgttccaaggttgcatggtctcca
tgatacagggcaacaagaagattagcattaagaggcctgaagaagatccagtgttgtcac
agaaactaaagaacttggaccagactcattgcaatgaacatttgcaagtgaagatgtgtg
gacagagggatatactgtgggatatacagaaagacactctgcaacataaaacagcttcca
tgatgaggtattttctatgctttgagtttgttgttgttgttatagttgtttgtttgtttt
attttggcagaaaggttgcaaggatgaagggctgatatgagaggacaaggagaaggagat
gagtgggactagagtccatgatgtgaaacaaagaatcaataaacaatttaaaaagaaaag
aaaggaaaggaaaaggaaagaaagaagctttgggtgcaaagaaatgataaaagaaagact
ggtatataaaacatagctcctccaaatcaagcatttattgataaaactccttgtaggcat
aatttttttgcaatatacttttaataagggctcaacttctcctctagtccatcacccaac
agaggtagtggaaaagttgttaggctctgttcagcagtagttctctgggggtgagactga
tcttctttggcagctgttcagttccgtagcaaatatcaaatacaaattaggaactgcaaa
ccagtccccccaggcaatcagacaccaggcatgaaccagcaactacacagtccagttctt
tcagccagcagacacccggcagctgtcgtttaatcctgaagaaaccaccatgttcccaac
cctaaccagcctgaggtaaggccacagaagctgcaagctgcggcagaaaccttgagagca
gttcttgggtgagtttctctcaatggtgatgttattacaagttgagctcaacaatgctat
ggaaggagaaccaatacatgcatgttgttaatgaagactaatgaggcggaggaaactaca
ccaagattcagtgctcatctcccactgtctgtgggttcatatttatattccttcatcaag
agtcagtcctttcatgtatttgctaactccacacatcctttcacctgtgtctgcttcaag
aaaacaatctttcacaagtttgcattagtaagacatcttttcacctgtgtgcctcagcaa
aacatcatttgacataacattccaaagaactagaagtttccacttcaactcattaggtta
ctgtatgtttttaatgctgtcttagtttggttttcactgccgggataaaaccacaatcaa
cagcaatttatagggaggaaaagatttatttgaattataaattacagctcaccattgaag
gaatctgaggcaggaacctggaggtgagaattaaagcagagaccataggtaaaggttgct
cactagcttgttcagcgacctttgcttacagtttcatttgccataggttcatggtaccac
tcacagtgggctgcatcttcctacaaccaattaccaattcagaaaattccatacagacat
gcctgggccagtgtgatggaggtgttttttcaggtgtgttttttcccctagcagtatcaa
attgtcaactaaagctaaccaggacagttgctaaatgtttagttgtttattctactaaga
gctgtaagtatgctaagttcagttatttcatgcatcaccctaagatgtagttactgtatt
ccattttacagtcctgaaaagtgaagttaagagaattttataaccatttcaagatgacat
agcaaataaatagtgaagtgttaaattcccacaaagaaggtaaaggaaagttgaaatcac
tcatcttggtacctaacatagacttttcatttcttgaaaaccatgcctcttcccatggaa
aaagaataagaatcgaggaagatgaaattggtaattgttgtttgaatattcatttaccta
tttgttttatgtcaagtgttgtagaaattagaccccagtacctggagctctctattcaaa
atacttattggagagactgctgagatgatgaggtaagcaggctggccagaagttgagcta
cagaagtgtagtaactggactgggaatgagaatcattttaatagaggtgagggagtcagg
tctttgtgtcccagaaagaccattcatgggttcaagttgtccgtagggaaagggcacagc
cttgggagagacattttcttttggctgatgataatttacaaaagaggatcctctgtaagc
cctaactctcctatgctcccattgcctgatagagtaagtactcccaaatggaagagagct
ttggcagcacagtgcacagcacagcatccgattgctcttaccctgcactgttcaaacata
ttcactccatagtggctttactgctacctaggaacatctgttccagaattctggttggtt
tgctttatttgtgaaccaagccactgtacaaacttattcattccatctagtggatttacc
actgcctaggaatagctgttccaaaattttagttggtttaatttattgcagaaacttata
agataaaagccagtaggaggaagccacagcaggactggggttacaatgtattcttcctca
attcctctcttaatatctattctagatggcactcttaatggctagcatctctgatcgtgg
ctttctgttgggtaatgaagacctctttataccttacagtcagtgccccttatgccatga
cattctcaactcatggctataacatgtcttatctaattgaactgcagagtatgaaactgc
agagcattatcttagtagatcacttagccacaattatatcttgagttgattggacaacca
tagcctgggttcctcatgatgaataaatgtcaatgacttttgcaagtgaagttacatctt
gactcctgaactcttgatacaatgagcctgagctcctcaggtttctctagccacaaaatc
tagtggaaccattacaatgatgattcctCTGTTGGGATTAGGACTTGG
Primer
(+)GGGTTTCTATTCCTGCACAG
(+)CCAAGTCCTAATCCCAACAG


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