Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2032 ]


Position: chr13:15,832,313-15,837,380 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCAAGCGGGAAATACATTAGacctacctgcatccctgagatagatgtgccaggtaaatgt
agttgagtcacgggtgcacagacagctttgtcttgtgaagacagaaagcatgcaatgtat
caggaaggccactactgaacttgaactgtgactttggaataaacaaaaagtgagggtaag
actgaaataggagaaacacaagaaacagagggtctcattaacacgatttggcttggtttt
gttatccctttgggggaaatgtttacaatagcaccagtagtgatggtagatggccagtaa
tggggtgctggagaggaactgatgggtatcagagagaagagggtacacttggctccttca
agctgagttcttccctgtagaaggaaacaggatagcaggtaggaagggcacccagatatg
cagcctcccttccactgcctgcagccttggtacctggaaagcagaaacatgataacacta
ggaagaaccagggtcagagacaggacttttctccactattgttgtctgcaagaaacttct
gcatgtaattcttctactgcctgtaagttgtttctctcccattgcaaggatacagtttcc
tcattgcttgttctgtttcctatcctgccacagttctgtgcagctcagctaacccttctt
tctgtgtcttttttttttttttttcacttactgagaaggctgtatgagtatctgaagtga
gaggtggtctggccagtgagctaaccacgtaggcaaagagcagcacagagccagcctcgc
ttattggccttgcttgggacatgaggctggcttctatttttctttttttaaaatactgac
caaggtgacattttgggcctgggaggataattctcacactgcttagacctaatgagacct
ccttctcaacctccagctaaagaaagattcacaactaaaagctaaaatttcattgaatct
ctgctttgaaaagggcccaggcttacaatgtgtacttctaatgcaggagtaaagggtata
tctcagtagtggtggccctcttggtcatcagtttccaggccattaaaataaaagtcctat
ataagcatttagctgtacatttagcccagcgtgccactcctgtttgtgctaaggccatgc
taattgaagagctaacaaaacagacctttccatggtcattaatgaggagaggtgggaacc
ttgtctgtgctcttttcttgtctacatctgggaccctttgcctgtaggaggggcagggag
aacactttccccaggagcagcctgcatggtccagcttgaatactccctgcttctggatta
gcactcttcccctgcagctgggaaacctcctgtactcagaaattccaggggccccaacat
gatccaggctcagaaattgggcctcagccccttactgttggcaggcacaaggctccaacc
ctccggggcttgtaggagccaaatgcactgtggaggtgtgattcactgagttcccagagg
aatggtacacagccagctggcagggaattactgaatgtccaggccaaggaattccattgc
tgttagctggaaacaagcagccagctacctcccttctcttgcttgctggctgaagcatgg
agctggagataagccagggatcttgggagaggggaagaaaaggggggggggtctaagctg
cttgtggccaagataagtctgtggctggggtcctcagctgagttaagtcaagaaatattt
ttattttcatttgaacatgattcttatactcacaaatatttacccaaatcatacttggat
atactgcccaaaagagattttttaaaaataagcagcaaatgggagacaagaaaaataata
tctatgccatagctcaggaagagtctatattctgaataagagatttcctcccctgtacct
tggatgctctggggtctctaggagtgatgctactggtctattgcctagccattctcaatt
ccttaactcttaacagactatggtgtccaggaagccaggtcccctgacacttcccatttg
acccgcatccttctaaacatgagatcatggaacatcgtgataaacttttcacttcaagtt
taaacaaagaatgaaaaccaaaaccctactcaagcagcttctccttcaagtttaaatcac
ttgaattggggaaatagttaagatctttttcacctgcccttgccccatctgcgtgtcagt
aacaaacaccttctacaacacatcctcatagcacaggacaaagagtactacactggtcca
cagcactgaaggtaagtagcaaacttcccattctgttgccttgatccaggctttcttcac
ttactgtgaagttttgagcagtttaatatctctttgcacaattctaccagagcatctgac
agcccccagcatgctgatgacaccaacgagtttgaaatgcattctgaggctgttctaaat
caagtagatttaacacagagccaaagctaaggttttaaaaacaagctgactctaatgtag
ccttgccaaccacgtgcactaaaatcctagcttcatttagtcacagagtttttcgtataa
gaaagaatgcaaaacagattaaagggaggtttggtctgttactgtatctcggatgtcagc
cccaactgttgatgttacacaactcacttccagtactaatcatctggggaattgcacgag
tgggacctcagaaacgaagactgccggaaattcagatggaggccacaactttagaccatt
gatggttctgaaaaggtgaaaatgcaggagtttcgatgaccttgtagggttaatagttac
taagtttattcacagaacttagaacagcaccatccttatgtttaattttattataaagac
tacagccaaggaccagagtggggtgacacataggccaaggtatgcaaaaaccctctcccc
gtaaagtcaaatgtgtacctgagggcacattagtgtgtccaccaactaacgagcttcact
gagttttgttttacagatgtttaatgcaggttttttttttaatttaagcaaaacttatta
aatcattcgccacctgatctaatgaagttgaccgactgttcctgccttcctgcagaaata
aagccaactcactgtattaaccctcgaagcacaagcatggtttttttggtagccaacccc
tattatgacacttttttttttcatgaaataatatcattggtatgaactcagatgtgattc
tatagtctttaaatagtaaatgtagtcctgttgctgggatagtagtacagacaacagctt
cattctacaggtgggaattcctttttttcttggaaaccaagaggttcagaacaaagacca
agatgtgcctggaactctgagatcccaggtctctggtaaagccttgatggaggctgacat
ttggacacagtatcaacaccaccaatagctaaatataagacatacacatgctgaagcatc
gaagttttttcgaggactcataattgtagatacaaaatgcttatccctgaaatgataaga
agtgcacaatggaaattaggatttcccccccacacacacacacactcggtcaatatttat
ttaattacagattgttttgtttcaaggcctcttagatcttcctattatttcctacttccc
tcttgaaaatttagatggaaaccccacctcctcaaatctcactgatggtttaacactgtg
aagttacctgtattcactttctttttgttgatactgatgaattaagggtaatttagaatt
tcaatggatcctttattcaatttaactttcccaagttgcttttctaagacatttcccctc
ctattccaatctgtagctccatgcagtcagtacaaagttaagacatccccctttccctcc
ttcatagttcttgagaccctaaaggcaagcatgtgacccttaaaaggctaatttgaatca
aattagagccactgggactatctatttgatgcatcttcattccctcttctaaaacttagt
tcagatccctaataaaatatatgccaaggcagagggagaaaatatgtagatattggtgga
aagttttaattctcatatttagcaggtaaccttaacttattccagccactggaatacaaa
aattcatataaaattataaagtgcaacaaagacaaggatccactattataactacggagt
tttacgtccttctcttaatgtggcatttggggctagatttttattttattttattttatt
tttattagatattttctttatttacatttcaaatgttatcacctttcctagtttcccttc
cccaaaccccctaatcctctcccctcttcccctgctccccaaccctcccactcctgcttc
ctggcccaggcattcccctatactggggcatagaaccttcacaggaccaagggcctctcc
tcccattgatgactgactaggccatcctctgctacatatgcagctagagccccgagtccc
ttcgtgtgttttctttggttggtggtttagtcctgggaagatctggggttactggttaat
tcatattgttgttcttcccagggagctgcaaactccttcagctccttgggtactttctct
agctctttcattggggaccctgtgctccgtctaatggatggctgtgagcatccacttctg
tattagtcaggcactagcagagcctctcaggagacagctctatcaggctcctgtcagcaa
gctcttgttggcatctgcagtagtatctgggtttggtggttgtttatgggatggatcccc
agatggggcagtttctggaaggtcattgcttcagtctctgctctaaactttgtctctgta
actccttctatgggtattttgttcccccttctaagaaggatcgaagtgtccacactttgg
tcttccttcttcttgagtttcatgtggtctgtgaattgtatcttgggtattctgagcttc
tgagctaatatccacttatcagtgagtgcatgcaatgttaattcactcaggatgatattt
ttagttccATCCATTTGCCTATGAATTT
Primer
(+)GCAAGCGGGAAATACATTAG
(+)AAATTCATAGGCAAATGGAT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.