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Mouse element [ mm2031 ]


Position: chr13:15,827,875-15,833,232 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGATAAAAAGTGCATGGTCCtggtacagtgacagacaggtacatcaatggaatagaattg
aagaccccgaaatgaacccacacacctatagtcacttgatctttgacaagggagctaaaa
acctcaacaagtggaagaaaagacagcattttcaacaaatggtgctggcacacctggcag
ttatcatgtagaagaatgcatatttatccattcttacctccttgtacaaagctaaagtct
aagtggatcaaaggacttccacataaaaccagagacactgaaattaatagaggagaaagt
gggggaaaagcctcgaagatatgggcacaggggaaaaattcctaaacagaacagcaatgg
cttgtgctgtaagatcaagaattgaaaaatgggacctcataaaattccaaagcttctgta
aggcaaaagacactgtcagtaagacaaaaaggccaccaacagattgggaaaggattttta
ccaatcctaaatcagataggggactaatatccaatatatacaaagagctcaagaagctgg
actccagaaattcaaataaccccattaaaaatggggtacagagctaaacaaagaattctc
aactgaggaataccaaatagctgagaagaacctgaaaaaatgttcagcatccttaatcat
cagggaaatgcaaatcaaaacaaccttgagattctacctcacaccagtcagaatggctaa
gatcaaaaattcagatgacggcagatgctggcgaggatgtggagaaagagggacactcct
ccattgttggtgggattgcaagattgtaccaccacactggaagtcagtctggaggttcct
cagaaaattggacataatactaccagaagatccagcaatacctctcctgtgcatataccc
agaagaagttccaactggtaataagaacacatgctccactatgttcatagcagccttatc
tatagtagccagaagctggaaagaaccctcatatccctcaacagaagaatggatacagaa
aatgtggtacatttacataatggagtactactcagctattaaaaacaatgaattaatgaa
attcttggacaaatggatgtatctggaggatatcatccttagtgagttaacccaatcaca
aaagcagtcattagatatgcactccctgttaagcggatattagcccagaaacatagaaca
cccaagataaaatttgcaaaacacaagaaaatcaagaagaaggaagaccaacgggtggat
acttaattcttccttagaatagggaagaaatacccatgaaaggagatacagagacagagt
ttggagctaagacaaaaggatggactatccagagactaccccacccagggatccatccca
taatcagccaccaaacccagacactattccatatgctagcaagattttatgaagggatcc
tggtatcgctgtcttgtatgaggctatgccagtgcctggcaaatacagaagtggatgctc
actatcatctattggatgaaacacagggccccaatggagaagctagagaaagcacccaag
gagctgaagaggtctgcaaccctataggtggaacaacaatatgaactaaccagtaccccc
agagcttgtgtctctagctgcatatgtagcagaagatggcctagtcggccatcactggca
agagaggccccttggtcttgcaatctttatatgtcccagtacaggggaataccagggcca
agaagcaggagtgggtgggtaggggaacagggcagggggaaggtatagggaactttcggg
gtagcatttgaaatttgaaatgtatataaagaaaatatctaataaaaatgcccacaaaaa
aagaaagcttgaatttatactccgtccaggtgtaaattaatcagctcacaaaaatgtgta
tcattcagcaagccaaaaataaaaaaggaaattgctactaatgaaaagatggaaaggcag
gattgtgccctatgttagaacaacaggactggtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtaaagaggtttttagaaagttgctcagtttgtggtttagccatt
ccctagacaataatggctgtctctcaaagaaaagtcaagaattcaggagtttttccatcc
agaagcctgtatgtctcagctggtctttggtctgcattggactctcaaagaagttctaat
ctcagtgaaggactgattgagcaacgattcaaaattcaaaaatgaattttctagcaagag
agaaggcaagcaggcaaaaaagcaaaagcttccttatggcatgtcagtttgtggtgtaac
agatattctacctcaaggtatccaatcaagaaaatcccttgggttttagttgactcaaat
tgtagtcaagctgacagctgagattagctatcatctgtctcaaatgcctttttaattcca
gagggcagcagtggagatgacacaggtttcctttgaaaataactcctgtgacataattgc
ataagtataaagattctgaataatttatgtatgagatataaagggttaagaaacagctgt
gtaacagctgtgtataaggtaaattagacagaacccattagtttatttttaattttattc
tttcattgaaaataatttttctcaataaattctgatcataattttttctcccttgtttcc
tctccaattctccttacatctcattcatccaaagttatgtccattctagaaaaaaaaaag
caaaaaaaattaataatgcccttacaaacaaaaaacataaaaacagccagatgtagtggc
acactcctttaaccccagcatttgggaggcagagtcaagccgaactcttaagttcaaagg
gagcttcatctacagagtgagtttcaggacagccaggcctatacagtaaaaccctgtctc
caaaacaccaaaaacaaacaaacacataagaacaaaactggaaatcatacaaacaaaagg
ccagtaaatatttggcttccctctagacccatgacctatctagtatattcttggccatct
aatcaatgttaggaataggttccactttagacagtgaacattatgtccaatcagaaagtg
gttggtcactcccacaacatctgtgccactattgcaccatcgtatgcaggcaggttacta
ttatagatataggtgagttggtgatttcctttgctccaactcacaacccacccacagctc
tttcatacctgcctcctgattattatttgtctttaacctacttacaggagcctcgcctct
catcacacctccatctccctgcaaattttgcctcttggtgtggacagcatcaccttagct
ctttctcacagcccgtcttagcctcttctattccatctgtgttatatgccacctaccaaa
ctacagaagcactatctaaaaggaaatccatagccaccatactactaaaattgaaggaag
agaacacccaacaaagataagactagatatcaacacataaaaagcatatcattcataact
ctagatgcctagacaccaatgcaaaaatgcaaacattaacagacaagacaatatatttcc
accagaaacagtaacccttggtcccaagagacctgcaagacacagtgaggagactgggct
gatgaaaagagagattaaaaaaatgaagaggaaacgtaaagaggtcaatgtggttagaga
caacatctgagtcaaggaatttattgaccaagttactgggcactatgggagatgtcttac
tttcagtgtgatggctaaaaagaggaatcagaccagaaaattgaatgacaaatgattcaa
agatgaatttagtgactttttccaaagatgccacatttctttccacataggatgctaccc
aatgatcagatgttactccatcttcccaatgtgaagagaaggcactgccaagttcattgt
caggagatgaaagcacaaagctccaaaacaagcaaacaaatgaaaagacaacaaccaaaa
catgttataatctgaatagttaccaaagtgaagaaatgcataccccgcagctttgacatg
gattatgttctaaggaggagaaaagtgggttttcttatgctttttatgttcctttctcca
gttccttcactcattgattcttcccttccttttctctatcctcttctctcctacaagaga
cttaactttgttaattagtcactataaaaagagcagaagaaggccgggcatggtggcaca
tgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagtttgaggccagc
ctggtctacagagtgagttccaggacatccaggactacacagagaaaccctgtctcaaaa
aacaaaatacaaaacaaaacaaaaaaagagcagaagaaaggcaaaagttggtgtgaaagc
aagcgggaaatacattagacctacctgcatccctgagatagatgtgccaggtaaatgtag
ttgagtcacgggtgcacagacagctttgtcttgtgaagacagaaagcatgcaatgtatca
ggaaggccactactgaacttgaactgtgactttggaataaacaaaaagtgagggtaagac
tgaaataggagaaacacaagaaacagagggtctcattaacacgatttggcttggttttgt
tatccctttgggggaaatgtttacaatagcaccagtagtgatggtagatggccagtaatg
gggtgctggagaggaactgatgggtatcagagagaagagggtacacttggctccttcaag
ctgagttcttccctgtagaaggaaacaggatagcaggtaggaagggcacccagatatgca
gcctcccttccactgcctgcagccttggtacctggaaagcagaaacatgataacactagg
aagaaccagggtcagagacaggacttttctccactattgttgtctgcaagaaacttctgc
atgtaattcttctactgcctgtaagttgtttctctcccattgcaaggatacagtttcctc
attgcttgttctgtttcctatcctgccacagttctgtgcagctcagctaacccttctttc
tgtgtcttttttttttttttttcacttactgagaaggctgtatgagtatctgaagtgaga
ggtggtctggccagtgagctaaccacgtaggcaaagagcagcacagagccagcctcgctt
attggccttgcttgggacatgaggctggcttctatttttctttttttaaaatactgacca
aggtgacattttgggcctgggaggataattctcacactgcttagacctaatgagacctCC
TTCTCAACCTCCAGCTAA
Primer
(+)TGATAAAAAGTGCATGGTCC
(+)TTAGCTGGAGGTTGAGAAGG


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