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Mouse element [ mm2030 ]


Position: chr13:15,823,111-15,828,877 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGCTGAGAATCAAACTCTGGaagaatagcccgtgccattaaccactaagccatctctcca
gccccatggaggcttactttaacgtggctttcaatgactaactccatttagaaatatctt
tgtctttgcattttcacactggtttgcagtagtgctctccacattaccgtctaaggtctc
ctttgcactttgtcaatgcatgttgtatgccatcaatttagcactgttgctgggaaacgg
gtgctgactgggtatcccaagacacagtatcagagcatcctttgtaaacacaggcacaca
tgaacttgagcatgccctattcattcccaaggggaaattccattgcccccaaatgctttg
atctctcacaaaatgtatccaaataaatttggggaaaaataagaaagcttgaatttggaa
gggtgaatgagaggactgcagaagcaacacagcttctgggacagaccccttttcgggctc
cagacatccgagctccttccccgccagagaagaggtttctgcctgggagggcttggcctg
agcaggtaagggggccatcttaggtccggatacctcagagactagtctgcccaggtgaga
gtgcagactacagaagcaacacagcttctgggacagaccctgtttcgggctccagacatt
ccaggcagaggagaggtgtctgcctggaaggactctgaccaccagagcagatgagagagt
catcttgtgtcccctgtccctcggagaccagtctgtgcaggtgagcatacagactgcaga
ggcaacacatctgggaaaggccctgttttgagccttcatcttcagccaggaggcaggtct
gaactccagatatctgtgcaccttccctgcaagaggagagcttgcctgcagagagtactc
tgaccactgagactcaggatagtgctagtctcccaggtctgctgacagaggctaacagaa
tcacaggaggaacaagctccaatcagagacaactataacaactaactccagagattacca
gatggtgaaagccaaatgtaagaatcttactaatagaaaccaagaccactcaccatcatc
agaactcagcactcccacctcagccagtcctggataccccaacacacacgaaaagtaaga
ctaggatccaaaatcatatctcaagatgctggtagaggacttcaagaagggctttaataa
atcacttaaagaaatacaggagaacactgttaaagaggtagaagtcgttaaagaaataca
ggaaaacacaaccaaacaggtgatggaattgaacaaaaccatccaagacctaaaaaggga
aatagaaacaataaaggaaacccaaaatgagacaacgctggagatagaaaccctaggaaa
gaaatctggagccatagatgtgagcatcagcaacagaatacaagagatggaagagagaat
ctcgggtgctgaagattccatagagaacatgggcacaacaatcaaagaaaatgcaaaatg
caaaaatatcctaactcaaaacatccaggaaatccaggacacacatgagaagaccaaacc
tacaggtaaaaggagtagataagaatgaagattctcaaagggccagcaaatatcttcaac
aaagttatagaagaaaacttcccaaacctaaagaaagagatgcccatgaacatacaagaa
gcctacagaactccaaatagaaaagaaaatcctcctgacacataataatcagaacaacaa
atgcactaaataaagatagaatattaaaagcagtaagggaaaaaggtgaagtaacatata
aagacaggcctattagaattacaccagacttctcaccagagactatgaaagccagaagat
cctggacagatgttatacagaccctaagagaacacaaatgccagcccaggctactatacc
cagaaaaactctcaattaccatagatggagaaaccaaagtattccatgacaaaaccaaat
tcacacaatatctttccacaaatccagcccttcaaaagataataaagggaaaacaccaac
acaaggacagaaactacaccctagaaaaagcaagaaagtaatccttcaacaaacctaaaa
gaagacagccccaaaaacagaatcccaactttaacaacaaaaataacaggaagcaacaat
aattttactttctcttaacatcaatggactcaattccccaataaaaagacatagactaat
atgctggctacacaacattttattgcttacgggaaacccacctcagagaaaaggacagtc
actacctcagagtgaaagtctggaaaacaattttccaagcaaatggtcctaagaaacaag
cgggagtagccattctaatatcgaataaaattgacttccatcccaaagttatcaaaaaag
acaaggaggggcacttcatactcctaaaagataaaatctaccaagatgaactctcaattc
tgaatagctatgctccaaataaaagggcagccacattcattaaagaaactttagtaaagc
tcaaagcacacattgcacctaacacaatagtagtggaagacttcaacaccccactctcac
ccatggacagatcctggaatcagaaactaaacagagacacatggacactaactgaagtta
tgaaagaaatggatttaatagatatctacagaacattttatcctaaaacaaaaggatata
ccttcttctcagtgccacatggtacctccttcaaaattgaccatataattggtcacaaaa
caggcctcaacagatacaaaaatatttaaattatcccatgcatcctatctgatcaccacg
gactaaggctgatcttcaataacaacataaataatagaaatccaacattcacgtagaaac
tgaaaaacactttactcaatgattccttggtcgaggatgaaataaagaaagaaattaagg
actttttagagtttaatgaaaatgaagccacaacacacccaaatttatgggacacaatga
aggcagtcctaagaggaaaactattagccctgagtgcctcgaaaaagaaaatagagaggg
catacactagcagcctgacagcacacctagaagctctagaactaaaggaatcaaattcac
ccaagaggagtagatggcaggaaataatcaaactcagggctgaaatcaatcaagtggaaa
caaaaagaactatttaaagaatcaaccaaaccaggagctggttctatgagaaaatcaata
agatagataaaccctcagccagactaactagagggcacaggggcagtatcctaattaaca
aagtcaaaaatgaaaaaggaggcataacaacagaacctgaggaaatccaaaacatcttca
gatcctactacaaaaggctatactcaacaaaactagaaaacctggatgaaatggaaaact
tcctagacaggtaccaggtaccaaagttaaatcaggatcagattaacgatctaaacagtc
ccatttaccctaaagtaatagaagcaatcatcaatagtctcccaaccaaaaaaggccaag
actatatgagtttagtgcagagttctttcagaccttcaaagaagacctaattccaactct
tctcaaactattccacaaaatagaaacataaggtactctaccaaattcattctatgaagc
cacaattactctgatacctaaaccacacaaaaatccaacaaagaaaaagaacttcagacc
aatttcccttatgaatatcgatgcaaaaatactcaataaaatcctcacaaactgaatcca
agaacattatcaaaacgatcatccatcatgaccatgtaggcttcatctcagggatgcagg
gatggtttaatatatggaaattcatcaacataatccactatataaacaaactcaaagaca
aaaaccacatgatcatttcattagatgctgagaatgcatttgacaaactccagcacccct
tcatgataaaagtcttagaaagatcaggaattcaaggcccatacgtaaacataataaaaa
caatctacaacaaaccagtagccaacatcaaactaaatggagagaaactcgaagcaatcc
cactaaaattgtggactagataaggctgcccactttctccctacctattcaatatagtac
ttgaagtcctagccagagcaattcaataacaaaaggagatcaaggtgatacaaattggaa
aggaagaagtcaaaatatcactttttgcagatgatataatagtatatataagtgatccca
aaactttcaccagagaactcctaaacctgataaacaacttcagtgcagtagctggatata
aaattaactcaaacaagtggcctttctctacacaaaggataatcagactgagaaagaaat
tagggaaacaacacgcttcacaatagtcacaaataatataaaataccttggtgtgaatcc
aactaaggaagtaaaagatctgtatgataagaacttcaagtctctgaagaaagaaattaa
agaagatctcagaagatggaaagatctcccatgctcatgggttggcaggattaatatagt
agaaatggctatcctgccgaaagcaatctacagattcaatgcaatttccatcaaaattcc
aactcaattcttcactgagatagaaagggcaatttgcaaattcatctagaataacaaaaa
acctaggatagcaaaaactattctcaaggataaaagaacctctggtggaatcaccatgcc
tgacttcaagctgtagagcaattgtgataaaaagtgcatggtcctggtacagtgacagac
aggtacatcaatggaatagaattgaagaccccgaaatgaacccacacacctatagtcact
tgatctttgacaagggagctaaaaacctcaacaagtggaagaaaagacagcattttcaac
aaatggtgctggcacacctggcagttatcatgtagaagaatgcatatttatccattctta
cctccttgtacaaagctaaagtctaagtggatcaaaggacttccacataaaaccagagac
actgaaattaatagaggagaaagtgggggaaaagcctcgaagatatgggcacaggggaaa
aattcctaaacagaacagcaatggcttgtgctgtaagatcaagaattgaaaaatgggacc
tcataaaattccaaagcttctgtaaggcaaaagacactgtcagtaagacaaaaaggccac
caacagattgggaaaggatttttaccaatcctaaatcagataggggactaatatccaata
tatacaaagagctcaagaagctggactccagaaattcaaataaccccattaaaaatgggg
tacagagctaaacaaagaattctcaactgaggaataccaaatagctgagaagaacctgaa
aaaatgttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccttgagattcta
cctcacaccagtcagaatggctaagatcaaaaattcagatgacggcagatgctggcgagg
atgtggagaaagagggacactcctccattgttggtgggattgcaagattgtaccaccaca
ctggaagtcagtctggaggttcctcagaaaattggacataatactaccagaagatccagc
aatacctctcctgtgcatatacccagaagaagttccaactggtaataagaacacatgctc
cactatgttcatagcagccttatctatagtagccagaagctggaaagAACCCTCATATCC
CTCAACA
Primer
(+)TGCTGAGAATCAAACTCTGG
(+)TGTTGAGGGATATGAGGGTT


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