Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2029 ]


Position: chr13:15,815,652-15,820,225 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTCAGTGTGGCCAGAATACaccaagcagatctggaacccttggttttatatttgttagt
ttctttacagatcctaaatggaggctagaccgtaacctgtgttgatgttgaaccattcgc
actgcttttccagattgcctatattttgaaaataatagcagaataatactagaataaaaa
cttaaaatgagaagaactcagattttgatgaagaaattataattgcttgaatttgagtgg
ggcaagaaaaccttcagtagaggcccttgacctgtgaaggctctatgccccaggataggg
gaatgccagggccaggaagcgggagtgggtgggttggggagcagggggatcggggagggc
ataaggggttttcaagagaggaaaccaggaaaggggataacatttgaaatataaataaag
aaaatatctaataaaaaaaaatcctgggggtggcgggggggggggggggcggagaaagaa
aagaaaaacctccacaataagtatatttatagttagtgccacaaatctagtctctaaaaa
acataaaacctagttcaaggagctacaaatgcttgtcagaacctgacttaagaaatgctt
taactttacattctcttccctccctctgtgccttccctccaggcacacagtccaataaca
actatagctcgggtgggcccgggaccctcctcccgagcagaagtgacctgtcaggtgtag
acttcacagtgctgaacacactcaacaggagagacagcaataccagcactatcagctctg
cctacctgagcagccgcagatcctcgggcatctccccctgcttttccagccgcaggtcca
gcgaggcgtcccaggctgaagggcgaccccagaatgtgagtgtggctgactcctacgatc
ccatctccacagatgcttcaaggaggtccagcgaggccagccagggtgacgggctgccca
gtctgctcagcctcacacccgtgcagcagtaccgccttaaggccaagtatgcagctgcca
caggtggcccaccacccacacctctgccccacatggagaggctgagcctgaagaccaaga
tggccttgctaggggaagggagggactctggggtgaccctgcctccagtccatcctcctc
gaagatgcagtgatgggggaggtcacacatacagagggcgtcacctgatgcctcatgatg
cactagcgaacagtgtgaggagagccagcgaccctgtgaggacagtctcggagaacatgt
cacttgccagggttcaacgcttcagcagcctcaatagctttaatcctccaaatttgcctc
catcggtggaaaagcgtagcttagtgctgcaaaattatacccggcaggagagcagccaac
cccggtacttccaggcatccccttgccctcccagcatcacagagaatgttgccctggagg
ctctgaccatggatgctgatgctaacttgaatgatgaagacctcctgccagatgatgtgg
tacagtatttaaattcccagaaccaaacagggtatgggcagcagttgcagagtggcatct
ctgaagacagcaaagtagcccatgagccagaggacttggacttagcagggctgccagaca
gtcatgttggccaggagtacccagctctggagcagccctgctctgagggcagtaaaactg
atttgcccatccagtggaacgaggtcagttctggaacttctgatctgtcatcctccaagc
tgaagtgtggtcagcagcgccctagcgcacagcagcctcggggttttgggctatacaaca
atatggtggtacacccacataatctgtggaaggttggcactggcccagctgggggatatc
agaccctcggggagaatagcagtacctacaatggcccagagcactttgcaatccacagtg
gggatggacttggcaccaatggaaatactttccatgaacagccctttaagacccagcagt
atgggagccagctcaacaggcagccactgacttccagtgctctagatcatgcctgtggta
cagggattcaagggtccaagctaaaaggcaacagcttgcaagagaatgggggtttgctag
atttcagcctgtccgtggcaccaaatgagttagctggcaacacagtgaatggcatgcaaa
cccaagatcaaatgggacagggatacattgcccatcagctactcagtggcagcatgcaac
accaggggcccagccgccctggtcaacaggtactagggcaggttggtgctacctcacata
tcaacatctatcaagggacagagagctgcctaccagggactcaggacaacagcagccagc
catcaagcatggcagctatcaggggctaccagccctgtgccagctatgggggtaacaggc
gtcaggcaatgccaaggggcaacctcactctgcaacaaggacagctcagtgacatgagtc
agagcagcagggtgaacagcatcaaaatggaggcacaaggtcagtcccagcagctctgct
ctaccgtgcagaattattccggtcagttctatgaccaaaccatgggcttcagtcagcaag
acaggaaagctggctcgttctccctctcagatgccaactgcctgctccaagggaatggca
ctgaaaactctgagttactctccccaggtgctaaccaggtaacaagcacagttgacagct
ttgagagtcatgacctagaaggtgtgcagattgattttgatgccatcatagatgatgggg
accataccagcctaatgtcaggggccttgagcccaagtattattcagaacctttcccaca
gctcctcccgtctcaccactccgcgggcatccctcccattcccatccctatccatgggca
ccaccaacatggctatcggggatatgagttctttgctgacctcccttgcagaagaaagca
agttccttgcagttatgcagtaggcggtaggcaaggaggaccacaaacacaaagactgaa
atgacttgggatttttttttcttttttaagttctgtgtgtattttagcaatctcatctca
cctgattgggatgtgtctcaagtatattccttttatggaaaaggactctgaaaaacccta
aggtattctaggggaggaactgtcttccatttcagtttgaatcagtattgtgacattcaa
atcacccttgtttttttgttttttgtatttttttaaacctgtaagcctgccctcttttga
gtgaaccaatgtaaatgtatactgcgcatgttctttcttttagaagagaagtcatcaagt
taaaagatttggcctgcttctctgctaacccaggaactaggaattggtgggcttgtgacc
aaggggtaacaggtccacctttttaaagtttttctttacagtactcagtgacttgctttt
atgtgtgtatgtgtattttttattcccacactgagtacaagaattgaatgaatagtgagc
ttgaagattatttgtgggtgcactatagttagtataaatagcaggttttcacgtgtcctc
caccttgattcaattcagggcatacttttaacagcttcacaaaagtggaaatgtggggat
cctggaaatgaagtagtttgatgagggtttttatagggggtaattcttatgtaagtacgc
atcccgtgggtatgtctatatggtcagctctccattatctcctgtacattcccttcacct
ttatgaacattcagtgttatttagcactgcagtgagagtggacaggcagttggtgttcag
atgtgtcacacttttagctttttggtacgaagttagaccaattataggttgaaacaattg
ggtagaattacttggaggactgttttttggacttgctataattattcattagtcccacct
ctttcctcattgtcataggtaactgagaattgaattgactatacatagctctaagtaggt
atttaagcagcccacaactggatacatcactaccgtttattaaattcactacagcaagag
aatatgtcctttctaagtgccctattataaaggaaagatgtgtaaaacctagttataaaa
ggcaaaactcacatacattgacatcagaaataaattactttaaccagttttagcactgga
gagcatgaaagttgatgtttagtagccatgtgaatttcagataccattagtccttaccat
tggactagggcttttgttttgtattcagattttaaagatttacacagtgcagctgctctt
cacatgtagatcagatatgagagtcatactgtgtgtacacagagttcagggattatctta
gcatactactttaaaaccgtaaacaattaaagtgtttacccatcagccccaacatggaat
ttccccaaggctgttattgaccgggttgtgtgacttctcctcttaaatcctgcctgtaaa
tttaggagtaggaaggcgaaacccagtaggtgttaggtaataggaaggatgctatgacca
gccaatttcacttaggcctgttttctctcttttggagcccaaacttcaccagggAAGAAA
CTTTGCCATGTAGG
Primer
(+)TTTCAGTGTGGCCAGAATAC
(+)CCTACATGGCAAAGTTTCTT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.