Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2029 ]


Position: chr8:59,769,794-59,772,587 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TOX(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGCTCAAATGTCTCAAAGGtaatttctcatgtgtgtgttcctcattttgtttattttca
agcctaatgaacttcatattttcttggcaaaatgtcctgcatgtcattggcattttagtg
ttgcgtggctcttaatatttatctcaccatttgcaaaactctgtccatttgaaaatgggt
gctaggtttcacttttttggaagacagatctgtttcctaaaaatttacattgctattgat
gaccattgtcaattaaaataatgaaggggtattataatgatgaagaggagatttcaattt
ttccaattaatgcaaaacaaaagtcccattaaaatcaattaggaagccaaagctgaagtc
atgtattgtccctcatgacctgccttgatgctaaggccatgttcctttctccccttgtct
ggttacctagagctgaagagtgccacgttgaggacagagctcaaggtgcaaacatgaggc
acaatattagctacatatttcagcatatgttttcactttctttcctttgattttctttct
tttttttttctttgagatggactcttactctgtcgcacaggctacagtgcatttgcacga
cattggctcactgcaacctccgcctcccaggttcgagtgattctcctgcctcagcctcct
gagtagttgggattacaggcatgtgccacaacacccagctacttgttgtatttttagtaa
agacagggtttcaccatgttggtcaggctggtcttgaactcctgacctcaggtgatccac
ccacctcggcctcccaaagtgttgggattacaggcgtgagccactgtgactggctccttg
gattttctttgaaaagcaaaagaaaaataaaaaccctgtgctcatctcaggttattattt
ttaaaaaatgagtaagattttggtgtaactggaatggtgaaaaaaaaatccttggaataa
cattagtcatgttagtgatgaaatagtgttaaaatcacatacttgaatggcaccagaacg
atggagggcctgcctttcagtgtttaaaactctgtgtgcttcacaatccttccagagtct
gtattcctccttcaagtatctgcatccttccccgtccaacacaccagccttgaaagctat
cattatctctgcctctagcagacaatctatatcaaaacagttgtacacataaaactgcac
caccgcctcggctggctctgctctgatccagctgttagagtgaatagcagttggtgcaca
gagcgctggaacatgggtagccctgaggccttatttgctaatgtggctcaccagctgctg
ctttctgtggtctttgcaggcaaggcctggaaggctgccagttgcagcaggagcaggaga
acgtgaggaatctctcaagcccgtccatttacccctgtctgtcagcatttgacaccctga
gctgtggagtgctttccccagggcaataaggagaccctgctggctttagctgtgacaagt
gcttcctctcggtcccttttatacacactatcaaacacacaccgttcatagcaccttaag
aaaaacttctgagccttgctcttggctgtccatgcaggcctgcatgattaattagggcag
gaaggcaaagcggtttcatttttcttaggaataatgcactctaagagtctatgagaagaa
tgtaaatgttgatattatttaagtccccaatttgattacatatttttgccagggattcaa
ttaatatgtaaatgtatacaacagaataaatgtgtggggaaatttaataatcaaaattta
tttattattttcctaaatgcatttccgagagagcttaattatttgttgtccaaacacatt
aaataaatcgtttttacgtgaccttcttgtgatctatttattatgtagaaatgtgtactt
taaataaactttattttaagatttttgctattagacttcaattagttgcactgaacactg
ataattaacaatgaaagagggaaaatttggaaaaatacatatgcacagaacttgctatat
ttttaaagattgagacaagtgaggttcaaaagaaaggttggacatttttataaaaatgta
tttttatcctcagtattttaatttagaataacttgatttcaactctgcatttccaaaaac
aaaattgtttttgtatttaatatttggaatcttcgcttttctttcaaaagacaatagcaa
caagtagggttcagctttctttacagtacgctacaatagaatacctgtagtttagttagg
gtaattagtcattataaaacaatttatcacaagaaagtaagaaccctggagcacaattta
ttagatatttgccaaatgaacagccatagtactctctagaaccaccatcttcagagaaga
ttaaaactgcctcagaaaccagtgctcacactgcctgacttctacattacctgaccatct
cactcctttacactgtggtctctccattgtggcttcttccacgaatgggccccttattac
tcaaggaatttggtgtgttcagagcaaaacatcactgaagagtcttaaaagtgatggcta
aaaatcacactggctaaaaaccatgtcaccagttttggtgtttgtttgtttgtacatcgt
ctcccagggatgaaccaaagatcagatattgaagagcagcaagcaacagagagaaggggg
accctgaacctgttaacgcccttagtgcccttgcctggcctcctctgcagaactccactg
caattgctgcCACATCCAGCAGATCCAGAAaGaa
Primer
(+)gggctcaaatgtctcaaagg
(+)caccttctggatctgctggatgtg


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.