Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2027 ]


Position: chr13:15,785,008-15,790,038 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGTTTTCTCAACTGGCCACAatctagaatcacttgagaagagagtctcagtgcagctttc
tagaccagcatcaactttggctatgtccaggggattgtcttgattatgttaattgatgtg
ggaagacccaacctgagagttaaccacaccattgcctcggtttgggttttgaatggtgta
gtagtaaaagcggtggactaagcagtgatgatgtgtgcctgcatccctttctctaagctc
ttgacttggatgcagtgtagccttggatgcaaatataactctttcaagtttctgccttga
ctttatgagccgaagatgctcacccttaaagctactttttctttactattttatcatagc
aacagagaggaaactaaaacaccattacataaacaccataggacagtcccatctctcagg
gatgaggcacggagaaccttgaaactcatctagcctgtgttctttggaagaaaaaaaaca
agaaagtgagagaagaaagattaaggaggaagaaagattatttggtctgaacagagcaag
atggaaccagccagctaaggtggtattggttactaaacaaaggacgaaaagaggtgcagg
ggaaagaacaaaatgggaggaaaagtactgtatagaaactggccagcctgattgctggac
tcagcctcagggatctctggaatacgctcctagtttctagaagcctgttttattccggac
agctctgcagtagccagtgctcccctcctaaagataagcctacttgtgtataagtgggtt
acagatcctggaccagtttgtggctgagtccccagagatggcatcactcatgctggtcgc
actccattcctttaaggttctagttgtggaggttggtcctgtccctgttcagatctttcc
ttctttcccatatcccaggtgtcacttcaaacctccatgaaagtaaggttttctgtttga
taaaccctctgcagatctatttcaatgttccattttcttgctgtagcaagaccttgtgtc
cagtaatagttctctgccaattgcttcaggcttgctgagagagtgggtctcaggtctaag
actgcagacctcagattgagcaggggagctcctggcagtagagacttacttctgccctgt
ggcttgccaggtggaaagggctttatagccagtgtctcctgctagcactgtaagtgaccc
aaatatgggctttcccacaggtgtttagagtgtctcttaatattctaatactgtcttcaa
ctatgccaggattattacctggaacctctggatgattgtgcctgcatgtcatccttttct
tttctttatacttttactgtctatagttccacatcaattgataataatgtcctcatgaaa
tcacatgtaatccaaagtgaagaatgtacttgtctgttttcttcaacaagaagcactacc
tgcataaatagtatctttcatgattatctaagtataaatgtagaaaacgtagcaaaatac
acatattcaccttattccaaagagactagaaagttatgtggggaaatgtatctaaatcaa
tagtgaaggaggttggcatgaaaaaaataagcaaagagaaacaaaataattgaaagtctt
ggctcttactgtttacttcttttatgtatcagagaagtgctttgactgttggtatccaag
actgatgaatagtttgttgactgatgtattcattgaagtaaaagtattcactgccgaagc
attaaataactgtatgagtttaatctcttctatgccaatattacgttaaggctatccaaa
attcaagccaatgaagttaagttgtcctttgaaataccacgattcattattttcctttct
tcctaagagcaacacattttatagtttatggtctgatgagaggcattagagatcaaaatg
aaatttatttttgagacactaaagaaggtaaaattatttaacacgtggctgtggaatagg
acctaataatatttcattagcaatttcttttgacagaacttacaccctgccatattgaga
agcagctatttacagcacatcttaaatcttttcaatgggttttacaaatctttctaggta
agaaacataaacgctttcttgacaaatatgtttaaaggacatagtgtcctttgagataca
cttgacagattttcacctctgctgtgaatacctccgaagaaatgcagtggaggagatcct
ccaggagcactgacgcgttgtcagcgttctctagcaaagaaatgtagagcatgttactaa
gtcacattctccatccgtgctgttttagggaacacaacttcataggcacctactctgtag
gtataaaggctgggagtaccagggtagtgagatgcagatcctagaaccaggaatcccccc
ctgtaaaagaggtcaaatctatgcacatgcaaacacttgcagaatatggagcaggccatt
gctggggaaattgtgatactcaaagtaaggacgtggtgttgagctggattgctcttagtc
actcattcttgctgagtctctgtttcgctgtgtatgtctttcaactttgcaaagagcagt
ggtgacctgatcttttgtgtactaaaataatccttggcttctttcagccttaccaatggt
attcactttaataaaagtggactctgacaaatccccatgttaacaggcaaaccaagtgtg
aaagtgtcagtctataaagttggtaaagctcctacatttaagaatatgtcagaaatttac
atttaagaaattgttaatttctttctatatctgatattaaagaaggaaaatgcagctgaa
ctatccagatgtgtcaggtgtctttatcactttctagccctatagccatggatgcttttt
ttttgagagagagagagagagagagagagagagagagagagagagagagagagaccttta
ttagaaaatatttttgtgtagacagaaaaggaaatcagtgaatccagccctgcttacagc
taagaatacaacagcatctctcccagcaatgtcattcttgtttgaagaaaggacttccac
tacatggcttcatggacttgcactggaactcgaagaagatccatgaagcactcttcggaa
ggctctgttcccttgccacacttgccacatatggatgcatcaaatcacaccagaacaaga
tgtggtctcactaagaaattaagctaataatatcacattacctccctctcaggattcccc
aagcatgcataaatgcagaaagcctacagtagaatattacaggagagcctgtccaaggcc
ccagagcaagttgccttaccttccttgtaccatattatatatacatcttacagttatgcc
agcgtttaaagcattgtcatgctgcattataaagtgttttttatgtttaggattaggaaa
ctgtctttcactctccctttggctccttttatgtcctacaggcaaatcctttctcgtagg
tcaggaatgtaataaggtaggttttcctctctggggtattgtgtctgtcttactgtgttt
aaattgatgcacaaagctctttggagcaaaagacagtattttctttgtatagaagccagt
ggttcactagcccatggggattctccgtgttgaggattttaaagatacagtttacactgg
gtggagatgctggtgctctgcaaggtctccagggaggagagttggtcctagccctaggaa
tggaggtcttttctctgtgctgtcttgaagaaaaagcaaataaccgacaactttaaagaa
agaggaaaacattcaaagatgttaccaagctctttttaagagtgatggttcagaaacagt
aaagagaaattacaatataaatcatatatatatatatatatatatatatatatatatata
tatatagtgtatgtatgtacacacacacactctagaacacagtcattggacctccaacct
aatgacctaacatgattgatttcccaagcccacttctctcaacttgataatcacacttaa
tatttcactccccttaatatcaatgaaatatgacctagaggattaaactcctacaagagt
aggaggagtctgtaaatcatacttttattaaaaaaaaatcaaggtcctctcatggaggct
acaattaataaaagaatgtaagaatgagttaaaaaagaggtttgagtaaaatttctaaaa
gaacagccccaaaatagacaagctgtaaattgtggctgctacgtggtggatgagaggagg
aaggaaactgatagagtttgagttaagctagcatgaaactcggccgcatggtgaggagaa
gagcatcacagatgtggtaaggaagcacagactaccaggcaaagctgctacctgggctct
ggccaacatccaaaagaaaaatacagaagacacaaaaaggacaaggttacaactgagtct
cagcaggtttgagaggaaaagtgcattatttccttaaagagatgatggtcccttctctgt
cttttgcatgtataaatcgaacccacctttcattttttattaagtaattaatttgtgtat
ttacatcccagacgctgcccccttccaatcaaccttcacataaaccctctcctcgatccc
cctccccttcaatatccccccaccctgtcccatcaatctgcaggattaggctacatgcat
gccagggaccatagtccagcctctgtatgctccttgattggctcagtccctgagagctct
caggaattagattagttgacactgttagtcttcctgtgaggtacaaacctgcctttctaa
gagatgtttgttgttgtttatttgattggttggttggatggttggttagctagtttttga
ctaagtgattgaccagatcaactagattaactcttatgggaggaggggaaacctgcatgt
ctccccagaggtagattctgttcttttggctaggaagcaatggcttcgtcttaatggact
tccattgttactgtaaaataatgaaatcataGCAAGCACCTTTCTCTTTCC
Primer
(+)AGTTTTCTCAACTGGCCACA
(+)GGAAAGAGAAAGGTGCTTGC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.