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Mouse element [ mm2024 ]


Position: chr13:15,750,904-15,755,992 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

Reproducible staining in the upper hindbrain region.

Expression Pattern
ear (3 out of 11 embryos) 
other (3 out of 11 embryos) 

Embryo 2

Embryo 4

Embryo 5

Fasta sequence
ATGCCACTGGAAAGTCCTCTacagtctgtcattgcttttagaggatttgattcctaaact
gtgctcacagaaaacttctggacattggccactggcctgagtatcttgagataaaggtag
cacttcctggggacagactgtgacctggaaaatatgtggcagaataaagtggtgacaggc
attaacatgcataataggttgtaatggacacttaatgctggtgtgctggaggaaggagct
gagctctcccactggaatattcctccatcaaagcccattgatcactgatttcagtgggga
gagcttaatccatcagcgtctgtaaccagacggcactgatggaaattctttaggtggtat
tctggatgaaccaagctttccatctttacaaacaaatgagtgatatgacaagcatggtgt
tcaaaacacatttaaccaattgattttctttcctcttgtaataagatctggagacatatg
aaagcgatcggtgtgagctaagattaaagaaattgctccatgcacaggagcaagtggagc
ccagagcactgagcagtataaagcatggagtcacacattctcttttttctataaagtttg
ttattgcaataaatagttattattgagccgatgccccttatttccactttctagaatctt
ccatcaggattgtgatctgggcagatgtgcacatatgtctgatcttcatgctctgctttt
tcttggaagtattcaaaactcttggcagtgattgttcctaatttctctcatcagaacaga
aggacctggtgtgatttgggtggcttcagataaagctataaatattcttagtttgtgata
ctctctggcgtcagcagaagtgatcattttctttctcatcttcctccacagccctgcatt
gagcttcacctacccctccgctcctgtgtctcttcacatgcatcaacagatcctaagccg
acagcaaagcttaggctccgcattcggacacagccctcctctcatccaccctgctccaac
atttccaacacagagacctatccctgggattccgacagttctgaaccccgtccaggtcag
ctctggcccttctgagtcctcacaggtgagaggtgcagccttgcttcagcttggtccaca
gaggccttatcatcatgctggttgttagggtcacagggtccatcattgttaaggcttcat
acggcatcttgatttttctctaagggtgtattcagttttgatgaatgtgatccagggcat
cttctatcagagccgttagcttatgattaaaagtaggctagctgataaagccccactcta
gtgatctataaacttcatcttctattgatggtctatgtgtgtggactctcagccactatc
cactccctccactgtaaccaggctactactgggcacaatatgaccctccatagtaaacat
gaaacaccagtctctctacccttttgccagcctggggtggtttaagggaaaacatcttga
tgctataattgaggaacttcactcatagtttcttctgatctcccacccaaactcaacatt
ttcggaaataagtttagcttgttgaagtctagggcacttcctctcttcttcaagctttca
caagccacaagcgactcgtgagtcagaagtgaagaatgcatcatctggactctcccatgg
gtgactggtgttaacagaatcctcgttatattatcaaacaagcttgtttgttttcagact
ttttttttttacttgagttccatttattaacccaagcctgattttttttttctgcaaata
tgaccagcagagcaagcccacaagcgagtctgcagtgagcagcactggtgaccctatgca
taataagcggtccaagatcaagcctgatgaagacctccccagcccagggtcacggggcca
gcaggtaagacacacaggctttccaggggccttttcttctctcacggtgatttgggatca
gttcctcatcctctccatttatacacaacatttccctacccactgtgttcttgacattgg
ccatgtgtttgaaaatgaccccattagcgattggctgaattcatttctctagttcaaaac
caaatacttgcagtgaaggatgttatgtggggatatgtgttcttcataggtgagatggct
tagaagtttgagccatcgtagtccagagagtgtttggttagactcgtctgtttctgttca
tagatgtgatgaggcttcttatcactgacctcgaccctaagttcctgagcttctggcctc
atgcttcagctcagcagtttatgatgtccccttcattgattatgttctccacttttctta
ttttgctactttgtacttgttcaaaaagctcagagaatcagaagagactcaagtcccgcc
aaatagattcaggacggaattgctgatcacttaaatccgcctcttctaaagaacatgtag
ggtatgcccagattgccgtttcttatgcgcttgagcctggcatggcaggtttgatcagtg
ctgtttccctcaagtcagagcttagtgagagtcttcaggtccatgcagtcagaactttgt
tatcatctgtatggttcaacccagtccttactgaaggaaggcaatgggtccctccatgag
aattttgaagactgaatgaggttatgataaggagggagttctgaaataatcctcgtcata
gcgtgctggagaacaaacaatgttgctgcttacaccatggtgtattcatgaacagtttat
catgttagcctacagcagggctcagatctgtctgtgtagctagtgcctagaatcctggag
agtgtttgcattgcatttactaagaagctgttgctgacgactaggaaagtctgtccagag
catcgggtgttctttccacggcctcaaccatgagtcagacaagcatttccctgaagacct
gatattaaaccaagaaggtgtgtgatccctaacagaaaagtctacaaagtacctctcaca
tcaggggagagaactaaaagtatgtcagtgccattcgcctgcattataagatataacaat
aaataaagcgatcgaagacaatcaaaacaaccgaacaagatagggacagtttggaatagg
atgtaaaatatgctactcttatgggttttgttgttatttaatttttgccttggatttttt
tatttgtttattttgttgtttgtttgttttaagatgtcagttttgttcctagtctctgga
gcagggccaggtttcagcttttttctttcttttccactctgcctgattttccctctgttt
cttgccttcacccttccaggaacagccggaaggaacaaccctagtcaaggaggaagcgga
caaagatgaaagcaagcaggagcctgaagtcatctacgagacaaactgccactgggaagg
ctgcaccagagagttcgacacccaagatcagcttgtgcatgtaagtggctgctgtgtggg
gacggacgcagcttcccaaatcagcgacctttgcaggagggcagcggctctgaccctgcg
cggagtcaagtttcttagctggcagcactgagaactggagggggctttatgattttctga
gaataaaggaaaccctgagccatggtgcttgacctgttcagtcagctaaagcttagtgta
aaattcaataaagtcttcaatagagagtgtaatgactctgatcctgtaagccagaaaaca
ctattttgagttagaggctttgatggttattgagtaatagtaagctggacatgaattatt
attaaccttttaactaagtttcagtccccttccaggactcagtaacaatataaaaatatt
acaaaaacacatgggtccttttacagacctcaaagttgaaggagcctcctattattgtat
gtagcaatgtagcgctttatttttgacctgaaggcaacattgtggattaaagcttgcatg
gaaacaattttgtttaatgatggaaaccttacagtagtcacgttatgacaccattccttc
tcttaccaaaccaagggcagatatcttgagtgttatttctgatgaatacccatagctcct
ttgctgtgtctttgtcatgcttggcacaaactcagatgccagtggagcattctagccata
taagaccaagatcaactgccatgggacagcatttagagtgtctggaataagaagatatag
gctgagatgatgtctctacagaagcgcagtgtcctgttaaggcactaaggatgattgtac
caaataggacagtttcttatgattgagcatctctatagcgcagtggttctcaatcttcct
aatgctgtgagccctttcttcatgttgccatactctccccaaccacaaaatcattttgtc
gctatctcgtaactgtaatttttctattgttgtgaattgtaatgtaaatatctgacatgc
aaccccacaaagggcttgtgccctacaggttgagaactgctgctgtagcgattgtgtcaa
gtctagcacacgagattatgagaaacgtgatatacagaatgttagatttcacctcttacc
agcaggacctcacttcttctctttaaatcatgcctctttgtatatgtgtaagtagaaata
tagatttctcaagtacagccaaaaagtaagtcaaatgtttttaattagcgtgtattttca
ggtttttccacacatgaaatttgatgtttttttttccttcctcttttgttttattcgagg
actaattttaggctaagtctggcttaatgactctttatttgtgctgactgctttaatgga
aagcacaaaggccttgtaggaagtattctcaaagagtaccatatgccaggaacattacca
gtgaggatgagcgctatagtagcacctgaaccttatcgctacctaactgataccaaggcc
tgttagggtttagggtttttttcccccttttttatcttgtaaaagcattgtaaaggcagc
agctattgcagttattttatataatctcaatgccaagattcctgtaatgtctcagtagat
ttgaatcatttctgtgagaagggtactgaTGCTACCAGTTGAATGACCA
Primer
(+)ATGCCACTGGAAAGTCCTCT
(+)TGGTCATTCAACTGGTAGCA


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