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Mouse element [ mm2023 ]


Position: chr13:15,736,806-15,742,150 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGGCCTATGATACTGCTTTttttttttttccttcttgctccagcccaaagaattatttg
tttattatatgtaaatttgctgtgtctgtcttcagacacaccagatgagagtgtcagatt
tccttatggatggttgtgagccaccatgtgggtgctgggatttgaactcaggaagagcag
tcagtgctcttaacccctgagccacctctccaggcgataatatggctttttagagcattt
caaagctctatctctgaaaggacctgttcagcaaatatcctttggcatgaccttgaggag
tgatgctaaagtccagctattatatcaagtggtcaacatatgtttttggtttttgttttt
gtttgtttgattgtttgtttgcttcttagcagtggtctttgacccttgtccagctaggct
ttgtttggagtcattcttgtccgagaagtgcttctgttaatctaggcctcaaatgtgggg
attaggaagggatggcggatggtccacataggaataaagttgccagtctgagtctactaa
ccacccaggaccaccttggtgtcctctgaaggagtgtggcctgatgctggcctctttggg
tagcctgttaccacacacaaagcaaaagaactatgttgcgccctttgtgagggttttgtt
gttagcatcagtagcataaagagcttaagtttcagattcatcataaccacatttcaatta
gcaattgtttggggggggggaacagttcactgttattatgcaaattagttatttaaaaat
ctgcaaataaagaattaaaataagagagactccttggaaggtcagcctgcattactctct
ctatttgataagaatgtgtttagtcaggcggtgccttttttttttttttatctaaataaa
ggatgaagctacccttttactttgtaaaacctaattaaaggaattttaatttgccagagt
atatggtaaattgactgtcattaagtaggaatttagatatcctatcattcatcacatgaa
aagaaagctcctctttctttgtcagaaatttttattaaaacagagaaacaaaaacaatta
acagaaactaggttggaactccttgtgctggagcagtaaaacggccctgtggctaggctt
gtcgtcgctcagaggtagagttctcacctaggctttgcatagtttctacctctgcagact
tggtggaagcacattgtgtgacccaggatggaccttgacatggaggcgagagtacatgat
gtgacataatagactaagctggtatattcatagctctgaccgtccctgagattgagggac
catgagcctgtaattcctttaaggaacatcctaggggctgagaaagagcaagaaaatatg
gagttcatgctatacatatggcagagactgacttaaattaaactagtgctgttctcagag
agaagcaatgaggacattttctgtgacctgaagaatttgatgagaagggtttgtcaggcc
tcgggcccctgactttgagtgatgtatagtatatttaaggctccctatgtctcatggtat
tacatcacctcccacatcactgatagttagtgaatgctagcatttagaaggctagggtca
atcctgatcatccttccaaaatccggcatggcgggaatactgagtgtctaggttatcttg
ctgcttttgagtcctacgagaaatggttgtgtgaaaaagtctggtctgtcactctagttg
tctaaaaatgacagacatttcttcattaaaatctcttatgatgcaattaacttattgcag
tgagtagacataaaatagttacattcaggatcagagcataataaaaatgagatgccccct
tgaagactgggagtgtatggagggccaggattactcttctgtacttacgtgccctgagtc
tgcgggtgctgaagctgttctaaatgagtgaacccaatttaaacatgactgaaagaaaac
attgagaaggcaccgtgcttctcattcagtgtggtggaatggtgttacatatggatgttg
ctaacagtaccattgtggtactgtttatggttgtgagattaactgtacagcctttcatac
tcacttcttctgtttcattaaattatctcagcaaggagggttgttatcttgcttgaggtc
agttgtggtaacacaaacttttaattccagtatttgggaggcagagtcgggggattgtca
gtttaaggccaatggcataccacccacccacccccaacacacaatacacatgtaattttc
tgaatgaggcaaaaattgtcacatctctgtaagcatcctatggaacataaaatcttctgt
ttgtacttaaaatcattgacagtcgatttgcttcttgtctggcagggtgaccttctgatt
cattaagctttagtttatgactgacttgtacattgatcttcagaaggcagacatggacaa
gcggttagcattcgctgctgtgacctaacactaagatcttgatgtctaacaaatttgaat
gcaagtaatatttcactttaacccttcagttagaaatcaccatatcaagtgggcatatgt
ttaaattgagatactagcctccagtttaagaagcttaaagactgaagtttaaagacttag
ttctttaatggagaagatgggtccatctcaatatctttaggcatatcaggtcttattcac
attcttggcagggtttatgcctcccaacttagaaagtttataagataccgccatcaacaa
catggaatatataggcttagatgaggaggcttgtaggatgggaacctttcttgacaccac
caagcccaaggctgtataaggcaggactactctctgcattagaggggtttgacagtgcct
tgcctcttcccactagatatccatagtataccctgatgtcagacacctcctggggtacag
aatcaccctaaattgagtatggctgacttgcggtaatgcatttataagttgctttagtga
tgctgtaggtttaccagggagcatttaactgctgggttcatgagaaaggcaggcataact
acacccagttctttattttagcatgctttagttctttttttttttttttttttttttttt
ttggtcattcaattcactgtcttaagatggtgtgtgttagagtggagagggcattgtgtt
gcaactgtgggagcctctgtctttgttgcttgtggtgaattaatgatgggaatatctaag
cagctgtcagattcataaatcattagaaataagaaggctaacatataaaagtctctccct
tttgttgggcaatttatcatgttgcctgtatattaataaacagtgctccactgaggtaaa
cccttggaagataaatattttgccctaatttcttcaattgtagccagtagatcacaagag
agaggagagatgcttgtcaccacaagttgccaacttcttgtccctctccgttctcaccga
gaactgacagtcaataacatatagattctggctgtaggtaatcaagttctgctttgtttc
tgtaacaggcaccagatttcccagccctaggctgtcagctaggcccagccgaaagcgcac
actgtcaatatcgccactgtcagatcatagcttcgaccttcagaccatgataagaacatc
ccctaactccttggttacaatcctcaataattcccgtagcagctcttcagcaagtggttc
ctatgggcacttatcggcaagtgcaatcaggtacgtattttcctgaatccgttatgtgtc
tttataataaaatgtcagtgctcataagaaccagtaatccatctgtagtgccagtggtca
gaagaattagcaggctgctgtatacatacatactaggattccggttaaataccacaacaa
tgagccaaagttaatttgtttgtgtgcattattcaatagttgttatatggcagttattca
gtttcaatgagatctcttcttagagttagagaattttaaatctcttatccagttcttctg
ttgcaaatatttctgtagaataaaaactaactctgcctggttgcctcgtatgtaagagtt
ggaggtacctacctagccaatcactggtgagttaacaggaaatctattgaaaacatattt
cttatttttttaattatatttttccagcttacctttaaagataaaactttggttatctct
tctgtgtacttaggtaatttttagaaacccttacatgagtgtaaagaatgtaagatgcta
ttgctaatgatcagatttgggcttacatccctgaatatgaaaggaatatgaaagaagcca
tgctaagaatttgtgagatactcatgttgcttttgtcagttgatcgctttcctctaaacg
gtgctcgttacagaattagcagtgtcctagcaagtagttaattaagacaatcctgcttat
aatctttagctctcattttcactccagttttcaccatggtcccaaaattcccttacgagt
aatctttgcatcacagttcgtcccactgtgggtgctccctcatcttggagtcatcctagt
cgtcccactgtgggtgctacctcatcttggagtcatcctagtgaacctggcatgaagcca
ggccgttggggagggaagacggatgggcattgggagttcaaggccagcttgggctgcttg
acagtctgtcaaaaacaagcaaaatgaaaccccaggaagacacgatacatcgatggaaca
tatgatctaatcactattctcactagccttgcttttaataaggaagaatgtattttatta
tttttttttaacaaatgggcaagagctctagttattaattgatgagcctttcatggtgac
tttacatgtttgggaaacttcaacagttcagaaaaatgcaataagtaatactactgtctc
catgtttattaagaataaccccttagaaggtggagaaagtagacactatagccaaaagga
cggagcggaagtcatgaccgcacaacaaatccccatgtcaggagggtgcacgtttcagac
gtacttgacggtacagacctttgaatccacggtggatcagaaagctaacctcagagattt
gcaagagagcattgatactttgattggcaatctggaacgtgagctcaacaaaaccaagct
gaacatgagtgtttgagatggacggcttattttatttgtgatgatgtcatcaagtttcat
gtcaatcctttttctggggaaatatatatatataccttaagttaattcctaataagttca
tgtcattcagttataaacactattcattaatatggttattttactTGTGAACTGAGCTGT
TCTGG
Primer
(+)TGGGCCTATGATACTGCTTT
(+)CCAGAACAGCTCAGTTCACA


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