Mouse element [ mm2023 ]Position: chr13:15,736,806-15,742,150 (UCSC browser) Source: Lawrence Berkeley National Laboratory Flanking genes: Gli3(intragenic) Timepoints: e11.5 This sequence did not show observable enhancer activities at E11.5 We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution. Fasta sequence TGGGCCTATGATACTGCTTTttttttttttccttcttgctccagcccaaagaattatttg tttattatatgtaaatttgctgtgtctgtcttcagacacaccagatgagagtgtcagatt tccttatggatggttgtgagccaccatgtgggtgctgggatttgaactcaggaagagcag tcagtgctcttaacccctgagccacctctccaggcgataatatggctttttagagcattt caaagctctatctctgaaaggacctgttcagcaaatatcctttggcatgaccttgaggag tgatgctaaagtccagctattatatcaagtggtcaacatatgtttttggtttttgttttt gtttgtttgattgtttgtttgcttcttagcagtggtctttgacccttgtccagctaggct ttgtttggagtcattcttgtccgagaagtgcttctgttaatctaggcctcaaatgtgggg attaggaagggatggcggatggtccacataggaataaagttgccagtctgagtctactaa ccacccaggaccaccttggtgtcctctgaaggagtgtggcctgatgctggcctctttggg tagcctgttaccacacacaaagcaaaagaactatgttgcgccctttgtgagggttttgtt gttagcatcagtagcataaagagcttaagtttcagattcatcataaccacatttcaatta gcaattgtttggggggggggaacagttcactgttattatgcaaattagttatttaaaaat ctgcaaataaagaattaaaataagagagactccttggaaggtcagcctgcattactctct ctatttgataagaatgtgtttagtcaggcggtgccttttttttttttttatctaaataaa ggatgaagctacccttttactttgtaaaacctaattaaaggaattttaatttgccagagt atatggtaaattgactgtcattaagtaggaatttagatatcctatcattcatcacatgaa aagaaagctcctctttctttgtcagaaatttttattaaaacagagaaacaaaaacaatta acagaaactaggttggaactccttgtgctggagcagtaaaacggccctgtggctaggctt gtcgtcgctcagaggtagagttctcacctaggctttgcatagtttctacctctgcagact tggtggaagcacattgtgtgacccaggatggaccttgacatggaggcgagagtacatgat gtgacataatagactaagctggtatattcatagctctgaccgtccctgagattgagggac catgagcctgtaattcctttaaggaacatcctaggggctgagaaagagcaagaaaatatg gagttcatgctatacatatggcagagactgacttaaattaaactagtgctgttctcagag agaagcaatgaggacattttctgtgacctgaagaatttgatgagaagggtttgtcaggcc tcgggcccctgactttgagtgatgtatagtatatttaaggctccctatgtctcatggtat tacatcacctcccacatcactgatagttagtgaatgctagcatttagaaggctagggtca atcctgatcatccttccaaaatccggcatggcgggaatactgagtgtctaggttatcttg ctgcttttgagtcctacgagaaatggttgtgtgaaaaagtctggtctgtcactctagttg tctaaaaatgacagacatttcttcattaaaatctcttatgatgcaattaacttattgcag tgagtagacataaaatagttacattcaggatcagagcataataaaaatgagatgccccct tgaagactgggagtgtatggagggccaggattactcttctgtacttacgtgccctgagtc tgcgggtgctgaagctgttctaaatgagtgaacccaatttaaacatgactgaaagaaaac attgagaaggcaccgtgcttctcattcagtgtggtggaatggtgttacatatggatgttg ctaacagtaccattgtggtactgtttatggttgtgagattaactgtacagcctttcatac tcacttcttctgtttcattaaattatctcagcaaggagggttgttatcttgcttgaggtc agttgtggtaacacaaacttttaattccagtatttgggaggcagagtcgggggattgtca gtttaaggccaatggcataccacccacccacccccaacacacaatacacatgtaattttc tgaatgaggcaaaaattgtcacatctctgtaagcatcctatggaacataaaatcttctgt ttgtacttaaaatcattgacagtcgatttgcttcttgtctggcagggtgaccttctgatt cattaagctttagtttatgactgacttgtacattgatcttcagaaggcagacatggacaa gcggttagcattcgctgctgtgacctaacactaagatcttgatgtctaacaaatttgaat gcaagtaatatttcactttaacccttcagttagaaatcaccatatcaagtgggcatatgt ttaaattgagatactagcctccagtttaagaagcttaaagactgaagtttaaagacttag ttctttaatggagaagatgggtccatctcaatatctttaggcatatcaggtcttattcac attcttggcagggtttatgcctcccaacttagaaagtttataagataccgccatcaacaa catggaatatataggcttagatgaggaggcttgtaggatgggaacctttcttgacaccac caagcccaaggctgtataaggcaggactactctctgcattagaggggtttgacagtgcct tgcctcttcccactagatatccatagtataccctgatgtcagacacctcctggggtacag aatcaccctaaattgagtatggctgacttgcggtaatgcatttataagttgctttagtga tgctgtaggtttaccagggagcatttaactgctgggttcatgagaaaggcaggcataact acacccagttctttattttagcatgctttagttctttttttttttttttttttttttttt ttggtcattcaattcactgtcttaagatggtgtgtgttagagtggagagggcattgtgtt gcaactgtgggagcctctgtctttgttgcttgtggtgaattaatgatgggaatatctaag cagctgtcagattcataaatcattagaaataagaaggctaacatataaaagtctctccct tttgttgggcaatttatcatgttgcctgtatattaataaacagtgctccactgaggtaaa cccttggaagataaatattttgccctaatttcttcaattgtagccagtagatcacaagag agaggagagatgcttgtcaccacaagttgccaacttcttgtccctctccgttctcaccga gaactgacagtcaataacatatagattctggctgtaggtaatcaagttctgctttgtttc tgtaacaggcaccagatttcccagccctaggctgtcagctaggcccagccgaaagcgcac actgtcaatatcgccactgtcagatcatagcttcgaccttcagaccatgataagaacatc ccctaactccttggttacaatcctcaataattcccgtagcagctcttcagcaagtggttc ctatgggcacttatcggcaagtgcaatcaggtacgtattttcctgaatccgttatgtgtc tttataataaaatgtcagtgctcataagaaccagtaatccatctgtagtgccagtggtca gaagaattagcaggctgctgtatacatacatactaggattccggttaaataccacaacaa tgagccaaagttaatttgtttgtgtgcattattcaatagttgttatatggcagttattca gtttcaatgagatctcttcttagagttagagaattttaaatctcttatccagttcttctg ttgcaaatatttctgtagaataaaaactaactctgcctggttgcctcgtatgtaagagtt ggaggtacctacctagccaatcactggtgagttaacaggaaatctattgaaaacatattt cttatttttttaattatatttttccagcttacctttaaagataaaactttggttatctct tctgtgtacttaggtaatttttagaaacccttacatgagtgtaaagaatgtaagatgcta ttgctaatgatcagatttgggcttacatccctgaatatgaaaggaatatgaaagaagcca tgctaagaatttgtgagatactcatgttgcttttgtcagttgatcgctttcctctaaacg gtgctcgttacagaattagcagtgtcctagcaagtagttaattaagacaatcctgcttat aatctttagctctcattttcactccagttttcaccatggtcccaaaattcccttacgagt aatctttgcatcacagttcgtcccactgtgggtgctccctcatcttggagtcatcctagt cgtcccactgtgggtgctacctcatcttggagtcatcctagtgaacctggcatgaagcca ggccgttggggagggaagacggatgggcattgggagttcaaggccagcttgggctgcttg acagtctgtcaaaaacaagcaaaatgaaaccccaggaagacacgatacatcgatggaaca tatgatctaatcactattctcactagccttgcttttaataaggaagaatgtattttatta tttttttttaacaaatgggcaagagctctagttattaattgatgagcctttcatggtgac tttacatgtttgggaaacttcaacagttcagaaaaatgcaataagtaatactactgtctc catgtttattaagaataaccccttagaaggtggagaaagtagacactatagccaaaagga cggagcggaagtcatgaccgcacaacaaatccccatgtcaggagggtgcacgtttcagac gtacttgacggtacagacctttgaatccacggtggatcagaaagctaacctcagagattt gcaagagagcattgatactttgattggcaatctggaacgtgagctcaacaaaaccaagct gaacatgagtgtttgagatggacggcttattttatttgtgatgatgtcatcaagtttcat gtcaatcctttttctggggaaatatatatatataccttaagttaattcctaataagttca tgtcattcagttataaacactattcattaatatggttattttactTGTGAACTGAGCTGT TCTGGPrimer
|
For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.