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Mouse element [ mm2021 ]


Position: chr13:15,680,399-15,685,636 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCAGACGCTTATATCATGTGGAcgtcacccctttacgtcctctgaccccaggaccccctg
atgacctttcacttcattttcaaccctttgaggccggaaatgtgggaaagcagtggatga
tctacagctgtaaagtgcaggaaccctgtcttgactttcaggcttatcctgaccaaaagc
gtgctatgctcctgaggaggaagagtgcaagtgtctgctgtaccccactcaagaggcctc
tttttttttttttttttaaataacagtaatgaaaaaatagaaacaaaatgtacttcaggt
tgcaaattctgagcagcatctctgaactcacagacatgctgtggttgcagaatggttgca
aagtgtctccagagatagcttcgtaagcttttattacacctccggccattgattgcatgg
ctttatcctactctccaatgtggaagaaatactccacacctcccattcacaaaaaccctg
gatcagagccaccttccctctgccttctgctggtgccagctgcagctctgtctcctggct
tctcactccttcacagccacggcgcacttgcacttcctaggccgcaaccagtgagggttc
tcgccacactcttaacttctttcctgtgctcatgttcaagttggtgcatagctaccaggt
tccttttacctaccctggggatttcacacctcatttctctgcgtgactccccattgttcg
tgatcacagaattattgaattccaagtaattactagatttttgacaatcaaattaaaaaa
ctgaatgccttagaagagatcaatataagaacatggtggctggggtagggttggacaatg
ggaaacacacacgcacaaacacacacacacacacacacacacacacacaaaccaaacctg
acccaaagcatctattttctcaaagtgtaggaaagaacagacttaaatacagccatatat
tttattttgcattttttgacggggggtgggggtgggggataagagtctcatggagcacag
gctggtctcagattcattatggcgtcaggcattgtggccttgaactctagttcctcctgt
agagtataaccagggttataggagtggctcaagctgagcttgaggtcattgtgttaaagt
gagtaccttggactatatgagacattcatcacttttatccccatttttctcatgttgtct
ctgttcagtcaatgtaattacaggttcctggccagtatttgaaggttattactgcacatg
actcccaaagactgaacttttctttcctttcagcagcaatgtagaaagaaaacccgcaag
agaaatccaacttacctgcttagcaggctaaccagatatggcaggggtccttccctgcac
acataaactgtgctgtggcttgaggatcgtgctgctgtagctgtggtgaccatagagtcg
tcagcctgagggacataaagaagtgtggggttaccagccactgcagagttttgctggagc
gactagggtgggaaacagcagaactctggctctcgtagagctaagcacctgcgagcatgt
tcagcctctgcctttccttgttgtttttattatctccttttttctagacagtgtctctac
gtgtagtcttgagtgtcccggaactcactttgtagaccaagtctcccaagtgctggggtg
aaaggtgtatgtcaccaccgcccagctattgcttcctgaagtgcagagaacaaacttatg
tacttgataatttggagactgctctgtttgagtaaggcaggaccaccagtacaccaattt
cctccatctgcctagcagcccccatctctggctcagttgactgctaaagctttcagcctg
cttggcagaaaactaacattaggacctagaaaactctcttcagtgaggtatatactgaaa
atttgatttcccctgtggtgagtctgggttacttgcatgagctcatgcaacttggccgtg
acttcatacctcactcattaaaattatcctatgtgactgctgacggaatatacccagaca
tgatgaggtgaagttgcctctgtgctggggaaaactcatttcagttcaacagatgcctgc
agagagctgcgttctcctgagcaggcctgttgttagacactcaggggcctgcaaggactc
gggcctttcaggctgtctaatgctgctgcttgtcgaagaggaaacaggagtgcttatctt
tcactggccatatatttcctgaaaaggttattttgtcatcattatttgctttttgttgca
agaacatataatgtagaagagcttcactgacaggctctctccatcctcattgttcttatg
tacttccgcacacttcactttcttcacactctttaatgaattaaatatgtgcttccggga
agtatggctccttctggggaaaaatagttctgaggattaaaaaaaaatgatcctttaatt
tatttatttttaatgagacacagaaaaaacaagtaaacagagtctattgtcattttgtgc
taagatgactaagtcctggccttatgcctccttgctcctggctctttcttatctgataga
ctcctgctgcagtgtacgttacaaaacagagcttcaggcctggtccaggcaggctgctga
ttctgttgaaacctctgttttctaatctataaaataaagattgagttttacaacgttatg
ggaaaaaaatcagattagagttgtttagtttcttgcagtatatctgtcttagtcgactta
gattcttggtccaaagtcccatagacttgttggctcacaaacagtagaaatttagtcttc
tccattccggaggctgcagagttcaagatcagcacagatgtgctggggtccgttcactaa
cttggaggctgttgttgactcctttctttgttctccggtagtagtagggccaagaacctc
tctgagacctgcttttataaggagtcctgtttatggggattcagcatttgtgacccaatc
acttgtagaagtgcactcaaaatactatcacacttagacaataaggtattgtagatatat
ttctgttgctatggagagacacaatggccaaggcaacttatagtggaaagattttcttgg
gggcttatagtttcagagagtgaatccatgactattatggtagggaacatagtagcagaa
aggcagccatagcccttcaatagtagatgagagtttatatcttatccatagcataaagcg
gaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtagttaactaggcatg
gcatgggcttttgagacctcaaagcctgtccctaatgacacaccatctttttttaacaag
gcacacttcctaattcttcccaaatagttccaccaactgaggaccaagtattccaatcta
tgagcctatgggggtcattctcactccaaccaccattggtatcagcatgggaattgtggg
gaacacaaatatttatttttaccagtcttgtagctagagtgtttccctggatccatccat
cttaaacatctgaaagccatgaattttgctattttgagatgtatgcttattaaatgatag
attcataatcttatacctaattgactggtaaccaggggtgatcttttaattcagtaaata
tttggaaatgcccactcaaagctagattcctttctgggtcaatggaaatcagagattatt
taggaagccccggtcaccccttcccccgccctcatgaactgtctgctatacactataaaa
gtggaaggtgctagaaataatgaatgaacaaagcacaagagggcagctgtcaggtcatgt
ttaaccagggtgggtattaatgatgttaggtagtgagtttgcctaggtaatttctacatg
atacatgtcacctcttcttccatctgtttctgatgaggatgtactgtcccctatcaaaga
agccaagtttaagattccactgagtgtgttgcatccctcacttgtgtcctggttctttgc
cactactttactatgcagtggtttattccttcaagctggactcacaaatatcctcctatt
catggtacaccccacacccaaatgcatagtactccaaagatattatagtagatggtagga
aagaaaatctgtcatagtttgtaggtatccctgtcaaaggcttagtcagcatcctgcagg
gctaatgggggtggtgatacctctttgacggggcttagtggcaggaagtcagatcactgg
gagcatatgcttgagggagatccctgaatcatgtatcctattgtttttgctttattgctg
atatcaggtgatcagctttctatgctgagttccgtcatgatgcataatactgggccacaa
ccatgtgcccaccaacgagagattgaaacctcccaaaccaagagtcataatgagctaaat
aaaatcagttcatcagctgggcatggcagcacacacttttaattccagagctcaggaggc
agagataggtggatctctggggccaacctagtctacaaagctgatctatgacagccaggg
ctattatacagagcctgtgttgaaaaacaaaacaaaacaatcaatttattgtatgcattt
gttacatcagtgagatgttgactaacattgatttgagaattagactattatctgtacagt
gcacacttgtgtgtcctggggctctctctctttatactgtctgtactgttacttacaact
actgccattctttatcaggggatggatagtgttttactcgtacttcttaatttttctgtc
tcttcccatgctcttctgtctttgaagcttgacaggtagttctagagccccatgctagcc
cctgggtgattttgggtaagggacttagccttgtgccccagtctacaatttaagaaatga
agattcaaatgtctgcgtcagaaagatgtaaaaaggaccctgtgagatcatgtgtagagt
acagtgcttggccagggagtaattgctgaaaagcggacttgcagagatgccccccaatta
tcttgcagaaccaattatcttggttccccagttaccatattgagctgctatcagaacttg
gatcaaagcaccatcttgtggctcctagctctgcttccatcctaataggatacatttgat
ctttgaatcatttcactggataaattggagattagaaagaagttcagttatttatgGCAT
TACAGGAGGGCTTAAGAA
Primer
(+)CCAGACGCTTATATCATGTGGA
(+)TTCTTAAGCCCTCCTGTAATGC


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