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Mouse element [ mm2020 ]


Position: chr13:15,637,220-15,640,800 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAAAATTGCATGTTTCAGCTtgacccccaagcttacagcttttcagcagggaagctcaaa
cagttgcttgtgtttggctgttaaagcccattggcagatgctcttggagccctgggctgt
ttgcttatgttcttgcttctgacttctgcttgttaccatggtggacagtatgtttctgtc
aataatttggcctagtgtagcctgtctgcaccgattctcaaactttattgagcagctcgc
ctcagctgaacgagatgagacagctttcgtcttttggcatgcagaagtgcttgctaaatt
tataagagtaggcaggaatattgcttgggagttatgctttccttgtgtacacagagctct
caagtctctgagctgtttgtatctgggagcatgtgcattgtctagtttgcatgtgaatgc
ccatcaaaagcaactcaatacagggaggtaaattcatgaagtgtgtgtgtcttttggcat
ttggaggcagagggttgttgaggtcacagtgccaactgtgtaataaaagttaaggtttcc
tgatgaaagtttctgtattaaaaacattcttgcttgcatttaattttttgaagttaaaaa
tgcctttttttttccctgtttcaactattgagcttgtatgacctttccacacaagttggg
ataagtctcattagcaaactcatgaccactatgctaggaggtaagcctgttttttttctg
cctttcctactttctccctgaagattgaagggacctgacagggctaaggccatactaact
atccagttggtagtaaagttgtattcacatactcgtcgttggaagacacaccaccagaga
accagagctgatgggagggatgcaattttaaaagaaaaaacaatttcctctgggagaatg
aagccatggaatcctactttaaacctggaatagattagtaagacttgcttactcatgttt
cccaaagaatgctaattaggcatcacagcccctctctgttgtatagaatgtacctcttac
cactctaagttaactttagtctgaaattttaaataaaggatttcctgagcacaaacgagt
ggaaactatgacttgggccatttgaaggctgtaggacatttttaaaaaaataaaacggtt
agtttcagtgtttctggcgctcatctgcttcttttcataactctgaagtcctttctgtag
cctgcaaccacactgctaatgaagctctggggcagacacatgcctgcgcatatgaacagg
gagaagaaaaatgaaggctcttatttggttatttttggtagtttgtcttagaattaccag
cagcaataatttgaattactttttcaaagatcaatgtgaaaatcagggattatttcaaac
tttgtgggttttagttcttatttgatagattaaacttgtgatttaccctttacttatgag
gtgtcaggtaagaatctgcacaaaacaatacaaaaataatatttcacagttgctttgtgg
ttgtcagcacatttattgtaaagactccaggatacctcatcatgttttgcaaggcatttg
gggtaaaataattcatcatttatttttcaagcttcacgcacaaataagctgaaactctaa
agttggtgttggcattaggtaaaatagtgactgtaatctcagtttctaataatgtatagt
atgcatagatctgctttcctccagagcaaaccaagggctatgtgcatgttagaagttagc
agtaatcccggttggggtcagttaggtaattacatctacgtatggattactttgaataga
cgtttacatattgagatatgttagtctgtctgggatgttcaacaatgattatacccacat
agttatttctttaaggatagagaatatgaaagtttttcagttagatatttaggtaggacc
tgtacagctttgtttctgtgagctctttctgccagagcaatcactgctggttaaatgtgg
tttgtttagggtggacagcttactgcatgtgattgtaacaggcaagtgagtccacctgct
gtgagctcagatagcagtttggctgaagtgtatgcctgcgttctagcaaaggtcacccag
tcccattcacagagaccagtggtgtagagatgggaagttcttataaggtgagcagaagta
ttagggatttgtaaagaaactgtgtgtggggtttcattcttctgtttcttaggtgtttgg
gtcacatctgagcatgacagggagcaacattcccgggcctttcctcctttatctacacag
ccaggttacacctggactttcagtctcaaccagctctcctcttggttccccgtttttgtg
tatgggcagacacacgaagtgtatcttaggaggttctatgctgttcttgattgacacctt
ggccctggtcactagcgggttctgagtttcatttctggccttgttaaatctcttgatggg
ttacaaattcaattcgggggggggggacccaacccaactcaactcaaaccaaaccctata
acccacaacatttcttggctggctttctaatgtcatcttccgagaaacaaagacgcagca
cttgtagagccacccagagccccactgggcagttgtacttcccagtttccagggaagtct
tgtttctttagcgaggcagaaagaaactaggtatccacatgatctgagggtgataaagct
ttcagcctggggtggggcatgcaggatattggtgtattttgcagagaatctccactgcat
tatctgccctttatctgcactttttacctcaggcttactcctgctttacccttccatgta
taatattggccaccattcatagacaactttgttttgcaagtatcccgccacaggtatgaa
tttacaaggtagtcatgaaggacaaaggaggtttcttccctacagagagaactacaggga
gaactatattgatgacttttttattgctccttaaagaagattctaaagtctttcattttc
cttctttctatagaggatgaaagtcctggacagatctatcaccgagagagaagaaacgca
atcactatgcagcctcagagtgtgcagggtctcaacaaaatcagtgaggagccctcgacg
tctagtgatgagagggcctcgctgatcaagaaagagatccatggctctctaccacatctg
gcggagccctctctcccttaccgtgggactgtgtttgccatggatccccggaatggctac
atggagcctcactaccgtaagtacttcctgccaattagcacattttctgagagacatggg
gtgaggggtgtgtatatggtgtgtgtgtgtctgtgcgtgtgcgcatgtgcgagcgcaccc
atacttgcacatgaatctaatgtatgaattatcaattctacatttataaaaagtaagttt
aattttgcattttttcctacttttgattctcatccataccgtttagagagcaacagtttc
ttgtactctaagcaattttatgtttttcagggtgtggggatttagggggatgattttgtt
atgaatccttatagatatttgCTGGAGTTTGAACCAATATG
Primer
(+)GAAAATTGCATGTTTCAGCT
(+)CATATTGGTTCAAACTCCAG


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