Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2016 ]


Position: chr13:15,487,129-15,492,398 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGAAAGAAACCTGAGCACTTggggcagaggagggaggctctttgcagagctgctgaggat
gggggaggtttcacagcaagagcctggagccaggcgcttggattccctggcaggaggcag
agaagggggtggggagcaggatgtgtcacatgccaataatccctttgatgttaactcact
tcccaggtaagaaataatggctaggggattgtctattcactagggactcacagacaatgt
atcagcagggtgcctgtcggaatcttgtgcaggcgagagaaggctgcagcaggtatggtg
gcctgcacaggggctagacactcgcattcttatattcctagtatcacatccatacaatca
agcccttttgtttatgtactttttttaaaaaagagtaaaaaatgattttacaggagaggg
aggtaaacccaaattgacagttggcttgtggctcatccaacttctgagctgaacaaggac
gcaaatggtggcggtgggggcggggggggggggctcttcttctgtagtcccctagtgctg
aggctgccatttgcatcctcccatccagaggttgctattcaattcacgtgatgtataaac
tgaacactattctggatgagctagacgagaatgcagagtaaggaggagcctgcttatgga
tggaatcaaaatcacatgatacgtcagaagtcctgggagagtttcagttggaattattga
caggaaagggtggacgataagcaggagacatttaattagcttccagtgtttggttattat
gaataaagctgctaccaacacatgcacataggtttcctctaaatagcaatctcatttctt
tgggtaaatgcctgaggaagagtgtgctgctgagcagcacagtaggaacatgtatgactt
tataaacaaacaatgcctttccaaagacttgtaatagtttgcaatgttacaaagacaata
agtgagagctccagttcctcatgattttccccaaagtcaatggtattagcatgattcttt
tgtttcttgttccttgtgaggttgtttttagccattctcataatacatagtagtacttcc
ctatggttttaatttgtattcccatgatgctaattgtgccctctataccattctacagca
attaaccatccatgatctctttcttcttacctctcttttcagattttttcaattgagtgg
ctagactttctctttctttctttctttctttctttctttctttctttctttctttcttcc
tcattattgagttttcagaattgtttacatgtcctggaagcaggagcagtatcaggtctc
ttctttgctatcctgcattgcttatcaacacagatgcatcctcagctgtgcattgtgaca
ccatgaagtagacttacacaggtttgtgtggtcagtcactggaaaggacctcttgatgtc
atcaagaggtggctgctggtaccgcgtggcttagtgttttacagctaattcttttagtaa
acagaaggagtatacactcaaaacaataaacaaccagtgtgagttgtttgttgtcgttat
caagcattgtatacatccataattatacaggctaaacttctctatgtctgacaccacaga
gggtttgttcacactggcattaccataaactcaagtgtttctatacatgtcatgataact
atcatgtcaggatactataggacagtgtcaggtgcatcatagttttaagaaatctgtcat
gcatgaggtttgccattgactgaaatgtcagtgtgcacacatggctgtcttttgtcccta
taacctgtttttcattttttcactagggtttgccagagaatcaaagtatttaatatagta
agaggggcaaagggagtttgagttccccctttttctttgatggtttatcatcccgagttt
atatctttgtctaatctaatattacaaaggctttgttccaaactttatccaagttgtttt
atgtgaggagcgggtgtggcagcagtcccaagatggcgcccgggactgcagctaagtctt
atgacttgcacctgacttcctcatacacctgaaaataagccacgaccatcgtgagagctg
cacaggtgcaccatgatgctggcggtttaaacaagtccatatttggtggagacatgcccc
tgccgccctgattggctgaagctgcgtgcctggtgaggtgatgtggcctgctgtgagtgg
atggggactgagagtatataagagtgagaggcctggggtttgagggagatatagatgaag
agaaagaagagagatgaagactgaagtttgctgaataaactgctgttagaaggactggtg
gtcgtgtcgttcttgctggttgagagctgacgcgacagttttatacttgtaagtttttat
ttatgtttatactccactttacttggtttttatacatgatgctgacaaagtattttttta
ctatggcctgaaaactgacatttgcattcttaggacaaatgatttccctatgaactgaaa
aagaaaagtctactccaaactttcagatcaaaagtagaagagataatagctggctaggac
cagaacatccagaaatacttaagaagaattttaaaacagcagatggttggatttcttaaa
catttcattctttatctagagtaaatagccagtgactctagctttatcattgtagcttgt
ttctatgattcctataaaaaagttaggataaaatctaaattaagatgactctttaatttt
tggtttttaagttctcaggtaaagttagactctagtggtataagactctggcgagtctta
gcttaccagggacccactgagtgaacaacacagagccaggaatcaatccaaaaagcaaga
tgaatttattgttccaacatgatgtggttgtcctatacctgatagagaggtggcaacctc
aggcagcccattaggtgaatttttatattgttttttagagtggcagcaaataggtacaat
attattggtagaacagttcattctttaaactgattagtcttactattgcatatgccagca
agattttgctgaagggacccatagctgtctcgtatgacaaatacagaagtggatgctcac
agtcatctataatatggaacacagggcccccaatggagaagctagagaaagcacccaagg
agctgaaggggtctgcaaccctataggtggaacaacaatatgaactaaccagtactccca
gagctcgtgtctctagctgcatatgtagcagaagatggtctagtcggccatcgttgggaa
ttggaattgggaattgggaataccccttggtattgcaaactttatataccccagtagagg
gaaatgccagggccattgtgggagtaggtgggtaggggagcaaggcggggagagggtata
gggaactttcaggatagcatttgaaatgtatataaagaaaatatctaatttaaaaaacct
gattagtctttaggaaatgagatggtaagggctttccttggctgcagaggtgcaacagtc
cctctgccctgaggaatgtatctacatgctctgggcttccctggtatgcaggtggtcagt
gatcatcccctctgtggtctgaggaatgtaattagcttctcccttctggaggggaggggt
gcctacgtgttctgtgacctttctcttctaggaagggatgaggtctggtggaatttccca
aagtccctgagctgacctcttcatttcccccttttcattgtgcatgtttcaatcctgaag
ctattgtggatagctatgcagctcatatctctggtcctctgtatttagctcttgatatct
ttgtctcaggaacatcaagtgtactgtacctatgcaatcttttataaaagcaactaagtg
acttagaatgtaagggccaaaggtcagaaacaggaacaaaatgatcaggggtcctaacaa
tgcagaaatccagggggagctgttaaaccaagactcgaaccatccttgggcttgttttct
ttctctccttctcttggctagatgctcttgtgcctttgccatagaatctttaaccacccc
tgagtggtcaaggtaaaagcaatactcttcccttaggactgcgcaaagccctccctgttg
taaaaagagtaaatctagaacatagtggttctgtaggcctacttcagagaggaagggtag
ggactcttgaaagtgggtgattgattcttcgatcctctctatgtctaagtctatgacagc
cctgagcttttgccttgtagtaccagggaagaagtccctgtcgctactcctgctgtgccc
agtccaagtaagagagacactgtcaaggcagtgatgggttcttgtttggtacaatagtac
ccatcccatctatctaacagttcttcatacggatagtaaaccagcctgggcaccaactga
actaatatacaaaaatctctagatatacttaggacacgggggtgtacagaggggatgagt
gagcccagctgagcaaagggacccttgggaggaggggacattgcccaggcagattcccat
gccagtcactgcctgtagggtgatccctacacccaacttctgggcccatcagcaggaaga
ggacttgttagacaggctaatattgggggagacaaaggcagtcccttcataatatagggg
agctatatcatagcagagccagcaagaacaagtcactttggacctggattcactgagtac
tgggaaggtcttactgataagctcagtcagtggggccaattctgagagaaaagggagggt
tattcctggatattggggatcatgacagtagttaaccgtacctgggttagtgctgggggc
ttgggcatggtagcttatggcagacactcataacctacttactggttaccatagggttag
tagaggtttctatcttgagtttgatgggaaaaaaaaaaatttatcatcatatccttcctg
gtatagtctgaggccccatgtcacctatccttggcctctttccctttctgagtaaactgc
acagtgattgggttgcaagaaaacttgaggcattgatcctctccagcccacattcctgag
ggctgttggcttccccaggagacttctggatgtgctcctgaatgaatgttctccaatgac
ttgtgatatcccccacaattgctactcatgagtccccttccttcagaggatctgctcact
gggattaaatcccggcttgagctcagattcCAGTAGGTATCACCCAAGCT
Primer
(+)AGAAAGAAACCTGAGCACTT
(+)AGCTTGGGTGATACCTACTG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.