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Mouse element [ mm2015 ]


Position: chr13:15,478,590-15,483,335 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CATCAAACCAAAACCAGTCAgaatagagaggggatgacactacataattattagaagaaa
aattaataataaactgaaataataaactcaccaataaaataatccaagctggatagtcag
attaaaaaaagtagtttcttctacatgttgtcttcaagaaatatcactggtaaagatacc
cactggctgagggccatgtggtagcataaaatttataaagcaaatataagctaaaaacca
cctgacatagctattttgaatgcaattcagtaaaccacaaattaaaattatgcagaagag
aaatggctaatctctacatttaattaataagacaaatcattgaaaatatataataattat
aaatatgtactaaatgttgggattctcaagttcataaagacaactgtaatggatgtaaaa
aatcaagtaagttctggctataaataaaaaacagctatacaccaatttcctttgtgaaca
taggtgcaaaacttctcattaaaattcttgcaaaccaaattcaaaattacatttttaaga
ttacacaccatagtcaagctgattttgttctaggaatgtaaggatgattcaccacaccaa
aattgatactgcaatacagtttataaaagagcgtataaaaggtcttagagagagcggtca
caggatcatacccggaacagatctcaacattgtaaaggctgtgtttaacaaatttatatc
caacattatttccctaaaggaaaaaaatctggaagtgtttcctctaaaacctagaatgat
acaagagtgccaattctctcttcttacatcagatgcaatgctcaaagccaaagtaagagt
gtaagacaaaataaatgaaagtgatacagatcagaagtcaaattatccctatttgcacac
tatgtaattctatacttaaaagactccagcaggaaactcttagatctgataaatcctttc
agcaaaatactaggatacaaaatcagttgcctttctaagtacccacaacaaactttccat
atttattctatgggtccaacataatattaagatcaaaacctaaaactaaaagacagctag
agaattttttcacaaatgttgatgcaaaaattcttaagaaaatgttataatacggacttc
cataatgggtgtacttgagacctaactctgttccactaggtcataccttctaaaggcttc
actatctcccagttgtaccaacatattgatgaccttaacctttgggaacccctcacccaa
acaatggtaatattaagaaaatcaattcatataaaaagtaaaaatattatgttcatgaca
acatgtgaagcaaagacttaatagaggcaacatttatcttgattttgttaaacatgcttg
caatcaaatagactcctttaatttaataattaagaataattttataattaaagtaattga
attatttagatgccttacttttaaaatatcaaaagtaaaacctggggaaaaaaggagaag
gactaaagaagaaacagccaaagtcaagtccagaattcagactgttctgcatcaaacatt
tctcaatgaactaaatatcttagaaatgttttaatatattcttatataaatagatcagat
catacttcttttaatgagaagatcaaacccaagtaaatatgccatgaatttcatcttcat
tattgagagatttggattgctttcagtcatatacaaatacaaatatctgcaatgaacata
tttatatgactttcagtgatatatgaaaatgtacacaggtacatctctgggagagagatt
gtcaggtcatcagaatctgtgcacaccctgacaatggtgtttgaaagatctttttctttc
tttctttctttctttctttctttctttctttctttctttcttccttccttccttccttcc
ttcctccctccctccctccctccctccctctctctctctcactttctctctttctttctt
tctttctttctttctttctttctttctttctttctttctttcttttccttccttccttct
ctctctctctctctctctctctctccctccctccctccctctctctctctctttctctct
ttctttcttttccttctttcttctctctctctctctctctccctctctctctctttctcc
ccatccttttggtttttgttttagacagagtttctctgtacagctcttgctatcctggaa
accactctgtagataagtttggtctggtactcacagcaatctggtccctctgactcctgg
ggtgctaggattaaaagcgtgtactacctctgccacccctgagagcttgctttatgaaat
tcacattcatgctctatattatttaatgcttccgtgtttgtcagttgaatatttaaaaat
cattctctggtttaaatgtatatttcttttgttaaaagtgaatgctcagctttattgcat
cttatctttataaacatggttttcttttttctgtgaactgtttatttatagaattcccca
cttatatttggaatagataatgcattttcttagatcagaagtcaaaaattccaagtaaga
atagtatggtttataaaaagtaatacaattcagaatttctctaccattccatcttctcac
tgcctagtaccctttcgcataaataaccaattccattacttttccatgtttgtttccaaa
gaaattgatgcataagcacagaaatatttgcatgtgtttatgcctgtatgtgttttcctt
tgtttcccctcaactggtagctcattacacacattcttcgtgttttgttttgttttgttt
tgttttgttttgttttgttttgtttttaagtaaaatgtttctgaagacttttgaggcttt
ccccaattccacctgaccaagggtaagcctgtaacaaggaccataattctcactgattaa
atacagtcagggaggctccagctcagaggaggaagaaaacaggagaaagaggtctgtttc
taagacatgttgttcataagcttctgccctgaagctatttcttcccaccagaaacctcag
gacggataaacagcccctcccagattactgagaaaagcaaacagcagatgtgcagccatg
gtttgaacacatccagaggggcacagcacagaccttggggaattagacagccacaagatg
aagaaggatggtccacgccaaggccacattagtataactcacagttggcctagcaaggct
gccagcaaagcagaaatggagctctgatcctaggagctgctggccctctttctgggtaca
aggtgatgccatgtcaagaatgggaaggctagacaagccaggaacatgctgtggtggtgg
gacacggaaaacccaaagaagcaaacaatcccaaagcgtaggtctggagtcagccaccga
gggtggggctgagtcccacaaaagcatactaacagacatggcctctgggcactgtgacta
accaggaaagatgagtgattaaacaagatcttacctgtactctgcatattataattagct
ttgtgcatgtttaaattaattaggagatagatttatatgtgccttgctcataggctcatt
tgcttctgtttgattccacccctcttacctttttgtcagtatcactaatcaaggaacctc
ataagttgctgaagaatggaaatttctaaatacccaactcactgtccagatgtggccaca
gtagaaaaaggattattttagctacttcagttctatcctttacacattgattaacattaa
gtccctatgagattccagacaaagcagactgggaaaaagtgatatcatgttagaccctac
ttttaaggaattcagtctagtgtgaaaagagagaggaaaaaactgagcaagtgcttcgtt
ccagtacaaaactgtgcaatgacaataataacccagtatctcagaagtaaaaaggaagca
tacatcagtgcatccaaagttctcagtaaaagattccccaaggaaaggatgtttgagcta
gatagactcaaaagggtttgtagggattatcttggtagaaaggtgaaagcaagcacttct
ggctctgggaccactgtgcatatagatacaatcaaatggagaaatggctcagaagtttat
tgctactgaggcaagggagcagagaggtgagagaaaatatatgggcaatgccaaagctgc
taaagcatttgagaaatgcaccctttacaatcccgacgagttccagtccctatgaattcc
actgagtatccatctacaagatcatccagggtcaccagtttgtgaaacatgacttgcaca
gttcatccaagacctgagataggatagcacaagccatcacattttacacaccaaaaccag
gatgggatactcactcccacccttgccatttcctattgcttcccaaccaagggagtgaag
aacaaatttattcacagtacaagggtaatctggcatttaggaagtagagaccagaggggc
tgctgtacatcctaccattcataagaaatccccacagcagagctagtcagttcaaatatc
aatggtgcagagtttaagaaatctgcccttcaaagtagaaacattttccccacaaacagc
tacactgtgcaacggtgctgtcttttgtaagtctaatcttcccatcattcacctcattta
ttctccttgactttcatgtcaacacctacctcagtaacaaccctttTCCTCAAGCTCTTC
TCATCC
Primer
(+)CATCAAACCAAAACCAGTCA
(+)GGATGAGAAGAGCTTGAGGA


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