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Mouse element [ mm2014 ]


Position: chr13:15,455,469-15,460,729 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGAAACAATACGTGCCGATaaggatgtaaaaagaaggggggcttatatgtcactgatag
atatataaaataacatacgtaccttgggagaaaatggtcagttattgaaaaatgtgagca
cagaggtatcatatgcttagtattccatctccaggtacagcaaaaccaaatgaagtatgg
ctcctcaggcacctgcatatgagagtttataatggcataatttatattcacctgaaagtg
ataagaacctaaagtatctgttcactgagtaaatgaagacagtatgctggaccacatagt
ggaatagtattggaaaataaaaatcaatgaactattaatcaatgtttcaacatagatggg
ccctgaagacattgcgctacatgaagggaactagacataggagacaacacagtgcatgat
tgcacttataagaaaaaaatgtcctaaataagcatccacagaaacagaaagaactggcct
tgcttctggctaggagagtaggaaatgggagataacttatgaaaacaggacatctttagg
atgaaatatcaatataaaatgtgcccagttctatgaatggtctaagaaacacaaaattgt
acattttgcatatggattttataggatataaacttgttttgttgaaaaatttcaatgccc
ctccatgatctaaaaactctttataaattagaaataaaggggaatttcctcaacttaaca
aagaatttctctgtgtgtaactaataaacttaatgctgagaaactagactcatccccact
gacattagaacaagggtctctccaccactactcctcagcataacattagaaatctcagct
gaaacaataaaagaaaaaagaagggctgaaagtatacaaatttgaagctgggtggtagtg
gtacacatctttaattccagcactctagaggcagatccataagttcgagaccagacagag
aaaactttagaacaaccaaggttacataaagaaactctgtggggggacgagggaagagaa
aaagaaaaagaaaaagaaaaagaaaataatgtgggtttgaaagaatgtcttttttcaaag
ctgacctgattatgaagacaatccaagggaatgaactaaactcctggaacacattccaga
ttgcaagtctaaaggaaccaacatgctcaatgttacaaaggcaagtacttacctaaatac
caaccatgaacaagtaaatgtttagatgaaaagcagttgttatactggtacctctccaaa
attaaaaatgcttatgtataaatttaacaaaatatgtaaaatctctatacaagaaaaact
tcaggattctaatcaaagaaatcaaagaagtactagatacgtggggaaatgttccatatc
tgtgggtagaaagactcaatataaaacagttacttcttcccaccgtaacatatgtaatca
atgaaaatcccaatcaaaatcccaaggaactcattttgtggatatcagcaaattgattct
aaagaaccaggggaggggaaaagggccagaatgatcagcataatattgaggaacaacaga
attgggagaatgcttatctcaattttaaaagctacatataaactacaggaatcaaggcag
cagagaagactgaaaggggcaggtaagccaataacagaacagagtagaggcccagaagta
tacccgcctaaatataatgaactgatcctcaacaaaggatcacagacaatgctcttagca
gtgattctgggatagctggacagcaacatgcattttaaatctgttttaaatagtcaagat
atggaatcaatacaagttgatagaaacggataataaaaataaaatatgtacagatctaga
ataatatttaatttttagaaataagaatactttgtcatctgttacacatgaatgaacctg
aaagatactgtacaaagttaaataagccaggcacagaaagacaaatgtcttactaccata
tgtatatgtagaatttaaaaacaactaactcatagaagtaaaaagtaggtgatagaaatc
agggctgggggttggaaatgggttagagggaatttctaaaagagcacttttctattagat
aggagagagaagtcttaaaacatccactgtacaataactgatggttatactaacaagaat
atgcaatatacttagaattgtttaaaagatagattttaaaggctttcacaccaaaaccaa
aaaaaaaacaaaaacaaaaaaaaaacccaaacaaacagaaaacaaacgaacaaacaaaca
aaaaaacagaacaaaaccctgtatgtctattataaatctgtaatttatactatggacaac
atctcacagttaccctgatttaactgtcctcaagtagtctagttgtacaatataaacata
tacaatttttatttgttattttcaataaaaaaatttaatctaggtgtaggccttacacgt
ttcacaacaattaactgaaatggatcacagaaatacatttaaaacataaaataaaactcc
tagatgtaacaggagaaaattctacatgatcagtgattaggtgataactttctggttata
atatcaaaggcatgatcttggggggtaaaaaagagttaacaacctggattctactaaaac
taaaattttcttctctggaaacgattatcaattttttaaaataagctaaagattagcaga
aaagaaatattgcaagagactgaaaactgtggcagcattgcaaagacaaagactacccag
tacacacccaactcatggtctttgccccaacaaaagtaaacctccaataaacatacaaag
aaaagcctgtgtagttagaaaatcagttgttaaaagatttttttaaaagaaagcatgcat
tagtagtatcttatgaaggatggatggatgatgatgatgatgagcagttgtttgcacagt
gaacatttatgtggcacagcttgtgaaagcatctcaccacacagcagtttcatgtgtgca
ggacaggaagatctaacacccaaaagaggaaaggcaaaccacagagctctgaagtggagc
agcgatgaaagcaatctgaattctacccacctcttctctacgtaaagataacatttaagt
aaagagtacattctttgcatttaaataaatctaatttttaaaaagtagaaggtaaaagag
aaattaaactaaatctaacataaaactaagcctgagatcactaagaaagggacttcaaat
ccaactcttagttttattaagggaagaacgggaatctctgttttccaactgtagtaatca
gtttgagggtgtcacacttacagaatgggaaggtgagcacgtggtcccatgggctcatgt
gtctggtagttttattgcttgagttgtgttttcttacacaaagccttggtgtctaaatca
aggaaaacccaggatgttataaacacaaacattcttccaagtttaaaccaactcctttga
aatgtccccaaaacagaagcatctatgcctccttttgcacaaagggtatggaagattaca
agaatatttccaagggtagcaccatatctagcattctccagggatggacctgactggggc
cgtgcagaaatgaagaaaagacacacagtcagataagctgagggtgagtatacttggctc
tcagatggagaaaaagcagcacccagaaaactcagtgtgttttactgcctacacttgaac
agggaggttgagttattgtatgcagataaacaggaggcagggcttatggtatagagctag
atcaaggagacaaattcaactaatgtgagtagaagtaaggaagcagtcttcaaaggtaaa
catttgtagtgggggatgataagctatggtgggcatcttttgcacaaactattactacta
acatttcaactacaggaaggccttgctgattctctgagcctcaccctggggaaaagcctt
tgccttcccacaggtctgaagctgtggtcctagacactgccgtgaccctgtcaaagccac
actcaggagtacacagttgcagagattcctctagtctccacaaagcagtgccattatctt
tatcactacagtttagaaattggtaggtgatgggggactgtccattattttagtcttgac
aaagcataagctgcttctcaggctctcaccaaagcaaacctatctatcatgctctggttg
ttagaaaaaacacctccatcaccatctgcagtacattttccagcacggatcagaaaaagt
tactatcacaatgtgtgttttactttaaggaaaagtaactttgagaaaccagacagtagt
tgatctggtgagacatgaagagtttccatattgcctcatcatagaaataaaatgctaaag
gaaaacaaatgtttgcacaggaaaagggagggtctgatttactaaccctgaacttaaccc
taccctctaaccctacccctctaatcctacccttctaaccctaaccctaaaccctaaccc
taacccaagcacaaccctaaccctaaccctaaccctaaccctaaccctaaccctaacctt
aaccttaactgcttgccaacaagttagacttctccatagaatggtagactagaaacagcc
attctatgatccagggtagaagaatcagaagaaaagatgagtttcagaaagtcccaaagg
ctgtgataggatagctaaaaaaaaatgtggggtggaacatggaacagaaggaagccaagc
agaacacagatctagctgaatggctggaaggctcagggagggaaagcaagctgttctcaa
aatgcaagccaggtagccatgatgaaaagaaacagaccagcaagcctaccctcaggagaa
ccatacaaccagttgaaggatttactgacaaccctgattcctccagcatatggtttactg
gtggagaaggattcctgtggttctttcaataagaaacacccctgtagtctcatgtatttg
aatgcttagtcatcagtgagtgaccctatttgaggactagaaggcatggccttgttacag
taggtgttgccttgttggaggtattgaggattcaaaagtccatgccaagccagatctctc
tctccctgcttcctatagaccaggatatagaaaactcagctactggttcagtacctcaac
tactagtatatctccatggtccctgctatgataatggaccaagcctctgaaactgtagac
cccaattaatttctttgtaagAGTTGCCTTTGTCGTGGTAT
Primer
(+)CAGAAACAATACGTGCCGAT
(+)ATACCACGACAAAGGCAACT


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