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Mouse element [ mm2013 ]


Position: chr13:15,438,955-15,444,214 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGCATTCAAAAGCTGAATGagcttttaggccttagttaaaaccaagcttcaggaaggaa
ctgctcaacttagtcttcttgctttgttctgtgtttcagagatcatcaaattggtttaaa
ggccttctactttccactggtttaaagaattatttttattaaaatatgactgatgtgacc
tgcccatctttatctttacctctgctctcaagacatacacattatgtggatgctaactat
aacagacaaaggtagtactccacataccaaaaccacaataaattcaattgtgttttaaat
tgaagaaaagcaaacaaacaaacaaaaaaactaaaataaacttatagatatgctccttat
acagcaacaacaattctagcatttgtttgtttgtttgtttgtttttctttttgtctttgc
ttcaatttcagttcttattagaaacacattaaagacatttcagacaggttcaaggtgaag
gacagtttgtcacagaactatgagaccaatttgttatttttaaaggcaggattaatttga
atgttatctcttaccagttgttggtatttaagatgaatgtattgagaataattggaaatg
tttgcataataaatagaaaccattgagcctatagttaggaaaattccaacagctttcttt
ccaatataaaagctataggaaggctttccagtataaaagcaatataagaaagttatacct
ccttacagggggaaaaacattttcttttttttttctttttttttttattaggtattttcc
tcgtttacattttcaatgctatcccaaaagtcccccatacccacccacccccaatcccct
acccacccactcccactttttggccctggcgtgcccctgtactggggcatataaagtttg
cgtgtccaaagggcctctctttccagtgatggccgactaggccatcttttgatacatatg
cagctagagtcaagagctccggggtactggttagttcataatgttgttgtacctacaggg
ttgcagatctctttagctccttgggtactttctctagctcctccattgggggccatgtga
cccatccaatagctgactatgaaaaaaacattttctaagggatgagacattattgatttt
tattctaccttcaagttttaatctgtcctatggaaagaaagtatgggttgaatgtgacag
agctgccagaggagatctgctgaagtatgtatttgaagtgtcctccaaaggccccgtgtt
agttactccttagtgatcctaagagttgttggcaactttacatgaagaagccaggtagga
actctcccatcccttttattcattgcctggagatgctgtgagcatatttgctccacaatg
cattttctgtcctgatgtctgtctaccacaggctcacaagcaacatgtccaggtggccat
aggctgaaagttccaaaaccagtattcaaaataaaactttttttttaaataaggttgttg
tccatgtttttcacagtaaaggcaaagcaactaacaagtcctctgtgggcagtcaggaag
atcagcagtaggagctaaacgcagtcacccagcctcttcctacaaccgagaggatgatga
cagaaaggaggggtgacaagaagcctcatctgaacaaaaagagattccttgagtttcaag
tccagttaaaaaatgactcgccaaaacacaggctgaactgacaagacatagctatctgaa
gcatataagggtttatacttcagagaacaaaagaggatgcacagaggacatcttaagtcc
aaaaatgaaccaagtactgtggctatggagacaacattgtagaatcaaaggccacagaac
tccagtgtcagctggatcccgagggccagactgtcactaggagctccagagcttaggagg
ggacgtggagggcagaaccagaaatgtaatgtaggggtagagttggcagcaccaaagaca
gaagcagccagggaagtggctctaatacctgggaagaacacaggactatattttatctgg
aaagagatgcaaacagacccgctattcttttatgttactttactgcttaaatgtgaaaaa
tacatccagaaagctacataaatattcaaaatgaaatttaacataatttcctctttaaaa
actgttagcaataattcattgcacaaagtaatgaatctcacagtactattttcagtcaag
tacataatggaacttgaccataggcacatagtaccgtctcctgttctccatgtgctcttc
cctttccaatagtcctactttggctttcactaatatatgtatataaacaaattatatgat
atatacatccataaacggaacaaaaaatgccagtagactctctgaaaacatttctgatta
ttctaaacatagccatttaaaataccaacaactagtaagagttaagatccaagttaagcc
aatttaccatctctatttcactctgttatctgatatgtagaaaaactatctttattatct
tcagttactgaaagctcacaaaaaaaaaattgaaggattcattttgaagaatcttatgag
atagttcttaaatctatctgttaagacttgaattataccacacacctatggtcacttgat
ctttgacaaagaagctaaaaccatccagtagaaaaaagacagcattttcaacaaatagtg
ctgaatcaactggtggtcaacatgtagaagaatgcaaattgatccattctctttttttat
ttattagatattttcttcatttacatttcaaatgctatcccaaaagtcccctataccctc
cccccacactgctcccctacccactcactcccacttcttggccctgacccgatgttctct
atggaatcttctgcacctaagattctctcttccatctcttgtattctgttgctgatgctc
acatctatagttcctgatttctttcctagggtttctatcttcggagttgtctccctttgg
ggtttcgtcattgtttcaacttccatttttagatcttgtatggttttgttcaattccatc
gccggtttggttgtgttttcctgtaattatttaagggatttttgtgtttcttctacctgt
ttagcagtgtttgcctgtagttctttaaggacttctacctgtttagcagtattctcctgt
aattccttgagggatttttgtgcttcctctttaagggcttctatctctttagcactgttt
tcctgtatttctttaaatgagttattaatgcccttctttaaatcttctaccaccatcatg
agatatgattttaaatctgcctcttgcttttcgcatgtgcaggggtattcaggactcatt
gtggtgggcatactgggttctgatgatgcccagtggtcttggtttctgttagtaagattc
ttacgtttgcttttcgccatctggaaatctctggcgttaatgatcaagctgtctctggtt
ggaggttgatcctcctgtgagtctgttagcctttgtcttagtcagggtttctattcctgc
acaaacatcatgaccaagaagccaggtggggaggaaagggtttatttggcttacacttcc
atattgctgttcatcaccaaggaagtcaggactggtactcaagcaggtcaggaagcagga
gctgatgcagaagccatggagggatgttctttactggcttgcttccccctggcttgctta
gcctgctctcttatagaaccaacactaccagcccagagatggttccacccacaaggggcc
tttcccccttgatcactaattgagaaaatgccttacagttggatctcatggaggcatttc
ctcaactgaagctcctttctctgtgataactccagctgtgtcaagttgacacaaaactag
ccagtacagcctctgtcagcactcctaggagtccagctctcacctgagttccagtggtca
gagcactctctactagcaagctctcctcttgcagggcaggtgtccagcagtctggagctc
tgatccacctcctgagttctggggtcagaaccctccctgtaggccaattctcctctggca
aggaatgtgcccaggggtctgagtctcagctctgcctcctggctgaagatgaaggcctga
ggggaccctgaccaagaagctctgttgcttctatcgcccatgtgctctcaggtgatcagg
aggtcctgggtgtgctaggggtcctgtgacatggagagtcctctggtgccctagatgccc
taggctgggttcactcagaagatggcaggactggccccgacctgaatggatcccagcctc
tggtcaggcagagttcctccatccctgttcctgctggcacaagaccctccggtattcttt
ggagctgatgttgagcattccactcaccagtgatcctaaggtgatcccgaggttctgagg
tgtggagagcactctggagcccttagcggcctctgttgggttcagaaggaagatcatatt
gatccattcttcttcttttttttttttctttcttttctttttcggttttcgagatagggt
ttctctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcaaact
cagaaatccgcctgcttctgcctcccaagtgctgggactaaaggtgtacgccaccacgcc
gggcatattgattcattcttatctctctacacaaagctcaagtccaagtggatcaaggac
ctccacataaaaccagatacagtgaacctaatagaagagagagtgggggaaacccttgaa
cacatgggcacagagggaaagttcctgaatagaacaccaagctttatgctctaagaccaa
gaattgacaaattggacctcataaaattgcaaagtttctgtaagacaaaggacactgtca
ataggacaaaacaaaaaccaacagattgggaaaagatcgttaccaatcctacatccaata
gagggctaataacaaatatatacaaagaactcaaaaagttagactccagagaaccaaata
accctattaaaaagtatagagcagagctaaacagagaattctcaactgaggaaactcaaa
cagccaggaagcatccaaagaaatgttagacatccttagtcatcagggaaatgcaaatca
aaacaactctgagattccatctcattccagtcagaatggctaagatcaaaaactcaggtg
acagcagatgctggtgaggaTGTGGAGAGAGAGGAGCACT
Primer
(+)CAGCATTCAAAAGCTGAATG
(+)AGTGCTCCTCTCTCTCCACA


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