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Mouse element [ mm2008 ]


Position: chr4:41,622,585-41,625,503 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cntfr(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTACCTGCTATACTCCCGGGgagaaagcctgaaacctggatgttcaagagcccctttgat
ctatcactggcctccacacagactcctactgggctctgggaaactcagggcagcaagaca
gtggtgtgtatgctagctaagtcagaggttgcttcgactttactgtgtatcagtgatcaa
aagaaaatgaagactgctcataatgtaagtccttaccaaaggtgttagaacaccttttac
cttagacacatggtctcaacaacccggtaccccagccccatgtctacatatactcatgca
ggtacacaaaatacatccaggatatgttcccagaagccaggaagaacccagtggttcccc
cacttaatatccttcctcccggaatcagtccagttcccccaccacagcacaagtgcagac
ctgaggcaaggaaagatttcctgcagcacaggctctctgttttccactctgaggatggaa
attgggggactaccaaccatgcagaagcagagatccaaagatagaccccaggggctactg
tgaaatttaaccatggctgctgtcaggtccagccagcctcgcagtagaccttggccagaa
acacaggcccaaacaaccagatacggacccaaacaatcagctctacactagcactgtcag
agagcccatcagacaaagatggatacagccagataagcagtgaccagagtacagccagca
caccaaagcagcagccaaaagcacagcaagctgcttcagcagaccccagcgagggagaac
aagagctcgggcaaagaaaccagcagcagccagagacaccgtcagaaacgcagccaggga
aagtctgacacacaagcagagaaaacgctagacgcaaacaggcatccactcagacaagaa
actagagagagacccagagctgccgccgaatgctcgctcagtcaggaagtagctgcacca
ccaagagcattgccagagacaccgtcagggccacagccagagatagcatcagacacactg
ccgaagagtcagccagacacacagccagagaagctgacacactgccaggtacacgcagag
aaagggcagaggaaggtgggcatcgggctgtggcgacgagggtgggagtgagcttgcctt
cctgagagctcctttatgggccccccggctcccacttgcctcttggctatcctccgctca
ccctagatgcttgccctcttctgagcctgcctgtccttatggccatagccacaggtactc
tctgctggtgtgaccttgacccctttccacaccagtgcctcctagggcctgggttccctt
ttgggcaggtccctaatgactctcaatcattcctcatctctagccactcctctggtctag
gaggttaggacaatgactaaagacagaactagccaatcacaaaatgaccccaagtcagct
agaatgctgagctggttgtggagaaagagagagggcggggtgggggcaggaatcctacct
ggctcccccaacccccagccttggaaggtggcctttagaccctccctccctctctctctg
ccatctgtccatgcttttcgcctagatcttccgcctcagtgccagtccactgaccaccac
ctgggaacaagaagcagcacatgggcaggcaggcaggtagacaagcaagcagaccagtca
gaggttagatccggagggagtgtcagggcaagagagcaaagcccctgctctctgctcctt
ctaggtcctagtcacgctctggaggcggaagatgtccaagacaggcacacatgcatcctc
cccagcgtacaaacacacacacacacacacacacacacacacacacacacacacgagtca
ggcccccacagggggaggggaggcttcttcatcaaagtcgcctccatcagcccgatgagt
tactgtaagggccgggccctgggccaacggggctgcagccacaggagacgggtgctgctg
agagctagtgagctagctagtgctgcagagagtgggggtggggtatcaagacagacactg
cagggtctgggcacacagagccttgggtaagagaaacaggcctggtgaggcagagcactg
agtgggtactgataggggcaaggactggagacagaagttgaagaagagacatgaggcaga
agacagggcaccctggctggaaactgcagctattccaaatgagaagacaaacacaaaggc
tcactatgcccaccctagaccatctcaaaagcccgtgtgactcctgtagctggtagacgg
cgagcagtcagtgcagccaccaggactggtaagacgcatgagcaggttcttcctgcagtt
ggaaagattcttgctggggatcagtctctaggaaacagggggggaataaagcctcacccc
ccccttgcttctgctgatacaaaataaaacaaaaactgccaccacctctctgccctccat
caccaccaactcccatctcaggacaaacagctcctttcccaaatccttactttaggactc
caggatagatctagatgataaacgtcatacaaccccagagaaggttgtaccccagcctag
gctcctttatggaccacacagaggtcagccccagaataagaatggaacagagtgcccaaa
catcatgaaagcagccccgtgctttataacacaagcttccagtaccatttctcacgtgga
accctgtgtcatcagtacctacatatacaaacaacatataagacaaatcctagggctcca
cttgagtgacactgtcccactgtgacacaaagacactaccacacaatgttaataagtcag
aggaaatgatacaattgcaccttgcacaatgacacacaagcacgtcaccacagtaacaat
gttgcagtaagagtcaatCACAACAACACCAACAATGCA
Primer
(+)CTACCTGCTATACTCCCGGG
(+)TGCATTGTTGGTGTTGTTGTG


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