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Mouse element [ mm2000 ]


Position: chr3:66,454,202-66,455,306 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ptx3 - Shox2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CGAGGCCTTCTCCCACtgtttcagcctaacccttgctgtctctttaatattttacagtgt
ctggcagatttatgattgttttagttatcgcgaagtttatctccctctgacacctgggga
ggcgtcacgtcactctgcctctatagcctcagcacatcctgaaatgaagaataagcagga
ggagcggccggggccgggcctcttcactggaggcctttgagcagcctctgcacaaccaga
ccttgtgaagacacacaccaactcatcagtgcttgcagcaggatcgacgcaagcgtgttg
ctactggcacaaacacaaccacctggacacatcccaacttctacacaggccagagagcca
ggcccactcacttcccacagaactgcagacagccccttccacagaagtccatccagctct
cgcagcgcctcaacgggggagctgggctcctgccatctttggggctcctcggtgtttggg
aggttatggggagtgggggggccgctccgcgtatttgatcggaagctgctcatctgctta
tatcaacaccttcttcaaaccggtcctgcgaggagtccacaacctctgcctgctgatcag
ctgagagagagctgtttagagaagagcggtgacaacagttcccttgaaagaggagccaag
aagaaagaacagcaagaaaacagacaaaggtgagctggccaagatcttaaaagagccact
ggcactgaacatagccctataggcttcaagattaaaaccattgttgtctaataaatggat
ttatgtgtgaatttatggttaaaagacaggaaatctccttctacccagtagggactcaac
acagcttttctctgccaggtgtctggttataaaagtgcatagcgacaggcaggctcttcc
cagcctaaaccctcagccccaaggtttattgccctgaaggcagggctcagaggcgagcgc
gggggtgggggtgggggaacaccgcatggagggggttctccgttcctgaaccccttgcac
aggccctaccttttccgctgtctcttttcaaggctcctcctccgatcctgtaattccacc
ctttcaCCAGCCTGAGCTTCAACTG
Primer
(+)CGAGGCCTTCTCCCAC
(+)CAGTTGAAGCTCAGGCTGG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.