Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1999 ]


Position: chr1:39,629,409-39,631,707 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MACF1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAggACAAGCTTTCACACCCCAACatacaccctcagagagtgaattctttttttaagggg
gtgcttttttcccctcttcaacttggcttggaaaaaagacttttttgactttttttctga
tgttaaatgatggactacattgtccttatagaaagcagggaaaaataaactaataaaatc
accgaaatcctacaaattactaggctcatattttgctgtatttctgtcatcttttctcta
tccatgtgtatataatgttgcttttatatatatctgttgttgtagttctctgtcttgctc
tttattattttgtgagcattctttatacctttatctacatcatgattttttacagtttta
tggaattccatcaaatggaaggttcatttatttaacatactccagtagcggggcatgtac
attgctaatttttcactgctatgataacgaacatccttgtaaataaatttttctgtgcat
ttctgattttttttaaggatggatttccacaagtggaatcactgggtcttaatacatata
ttcaaagctctggatgttggcttttaattttatttcacttttaaaggctactgagggtaa
caagaggctatctgtaacactgaatacctctctgatagctcttggccccttgtcctctag
ggatggccctgtcttcaggcttagtggccagttggctcagatgttttattatccagttaa
tttcatggtagaacaggggccaagtggccttctcacttagtcagcagctcccatcatgtc
atcatcatatcactgcactgctttactctgaagcttttctcacagcaactctaggcattt
aaatagcttcattgatccttccaaccctagtacccttttctcttgtagtggtaagggacc
cattaatgttgattgggaaactgcagtagcaagaatgaccatcaatattgtacaggaatc
ccacattggaaccctggattggtaccagattgagattctctttgttttcttgctgttact
gagctagcaccgaggtaataaattgggccagcttaatttgataaaataggttgacaaact
ttactgtgtcaacacacccctgctttggtagatttctgcctctggaagaactagaactgg
tgctgtgttttaaatcaatgtattacagccaagtgcaaatcagcttctgttatgtgggac
tgatagccttagagtagaattatagacttgatgagagtacatccttgtttctgacttgga
gtggacatcctggagcagataacgtgaggttttgtagctgatgatagactggggatattt
ggaggttagctggagaactgaaagaaggcacatgtgtaggactttgtgtgtagggggcca
ataagaaagtctctgcagcagttaggatagtggaaaatggcttgagtcactgacaggctt
gcgtcctgcatccttcatagtgagaactgtgtgcctttcccattcccagagcccttaagc
aaagctgtcataaaagggcgattctctccactgcagggaatctggaagtctgcatgcttc
tggggtgaggcctgtcaacaccttttacagcactaggcacctagtagaccatgtgcttat
ttggatagttgatagttttgtcctgttaaagttttttctctccttaattgtatacttttt
aggcttactgcatgtcactgggctagagagggtcatcagcacaaactcactttggggttg
gtttcagttgctgctgtttttgcaatgtgtattttttttgttacaactggagatggttgt
tatacgatccctatttctcaaagagtgagcctgtatagctaacaagcatacaataccatt
ttcccctcatccttgattttgttttcttgtcatgtaggcattagtattgaaaggttaagg
ccttcatcctcactatgctgctgtggtttctattggttgttggagaaaccccaggctgat
aatactacttttatgttgattactcattgtaacaactgtggggatggtactttcaatgaa
taccagttgttaaatagcatcttttgctcattgtggaatggcaggaaccttttggacttc
ttggtttgaaatcctttgatttggaagatcacttttttacaatctgttatcaacttaatt
gcctcactccctgatcatgttccatgtttcctgttgcatttactggaagtctccatctcc
ttccttcctttcattgagaactttctgacaggatacaaagattattgatagtccctgtcT
TTGAGGGATTATCAGCCCC
Primer
(+)caccacaagctttcacaccccaac
(+)ggggctgataatccctcaaa


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.