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Human element [ hs1988 ]


Position: chr7:120,536,767-120,540,791 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TSPAN12 - ING3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGAAGGGAGACAGTATAACCAAaagaaaaatgaaacaataatatcaaaatcctgacaga
aaattattaccaatctagtggtctaaactcactgaaatatcaactgggaatgagaacaga
atgttttcagtttccatcaggtcatcaaaatgttaatggcagatctctcaagatactaat
gtttcaaatggcttaataagattttgacatagaaagtcaaaaacaaactctgtttgtttc
tttctgtgtgaatcagtgttcatatgatatgcatataattagaaaaatcaataaagctct
tttcattttgaataaaaactcctatacacaaaaagtcattaaatgaaattatgtaggtag
ctttatttttccaaattgttattaaattgtattcctacacatttatttttttctagttaa
agttaatacccagtatattgtgtgctgcatgagttcaaaccccattcgtaatcaaaatct
gtattatttttctgagtctcaagagccttttttggacttccatccaaatactaaccaggc
ctgacccagcttagctttcaagatcaggtacatttggggtggtaggcccatgtattgttt
ttctgttgtagctgtaacaaactaccacaaattcagtggcttaaaacaatacaaatgcat
catcttaaaaatctggaggtcagaaagctaacaggtctcactggtttaaaataaagatgt
cggcaggactactctagggatgatccattgttttgtctttttcagttggtagaggcagtc
tctatgtgttgtattgtggcgccttcttccatctctgtgacattcttcccttgattctct
ctttatccagaaggttctttgaaggattcatgacattagattgggcctacctggataatc
cagaataatctctggatctcaaggtcctcaagattaactcccatcttcaaagtcccttta
ttcatgtatggtaacagatgccaggaattagaacagggatacttgggtggccatcattct
gcctaccatatctggcttgcagatacagaaatatagttctgcatttatccatgtataatt
ttctcctgattttaaaaacatataaatgtattttaaacctcaggaagcatattgtcaagt
atgaacataatttattaaaaataagttctaaacaaaaaatggaaaacattgctatgataa
tgatccaattaaaaaaataggtacttttcaagatttgtcaaaggaaaatgcaatcatgta
aatactaaaagtaaataatttggggtttttaaaaaatgggttttttttcaataaactttt
aacacagactataaaattatactgctacaaaggaggagtaagaattattttacatactat
ctgtatccctaaaccagggtcagctttccaaacaggtgaaatgaatggcagtgggaggca
gttggtgcacactatcccacctacttctgaccctccacgtattatctgtgttaaaagttc
ctccaacaggaatccattccttaggattcaaatcctctattaaaatgctagtccccagaa
taaaagctaactactagcaaaaaccttggcctggatttattcaaaactaggataacactt
gacatttgaggaaggatatgcatcagaagaaagctaccagaagctagcagtgggccactg
aaatagaaaatatagtaatcatacttccccttattttccattttttaatgcaccaccctc
tatcaatagtaagacaagtcatgccagccagctagtgaaagagaaaatatatggatatag
aggtatttttattaaattaaaaaaaattaatgtcttggccagagaggagattgacaaggg
attcttgatgaaataatatgaaagatagatagaattttaaagaaatgaaaacagatagag
gcagcctatcataaatcattgatcatatttacacctcatttttataacatttcctgcagc
aaacattgtttactcatgataaaaaataacctgaaattaatgccaaatgcccaatgaaaa
tattgcaaagcaaggacattacttgtaagattatttctgcttctgctcagaagcgtttga
aagctttatatcacttggtggcgtatttcattctaagcagcctcatctactttcatctct
gtgctatgtatagcatactgaactatcttcataagatcaaagggaaactcactgtacttt
atttacagaggcaaatttaatgcgtaaccagggtacttattttactaaactgactagtcc
ctttgaactactgtcttcactgatccatagaccatgctctaaatgtgcaggcttccttga
ctctggaaaatgttcttagcctaattggggtacttcctttgaactgcctgccgtgagttt
tactatgctgtaagtgctcaacagaggttggttcaggaggcatgactgcaaagtccttta
gaaaacaaaaaaataaaaaaataaaaaatacaaccaatacaacaaaattgaaagtatctt
atctcactatcaatagtgaataagaatgactcatttcaaagtacataattataatattag
tggttcttacaataactggtacacttctgtttatctggctatgaaataagctattatgct
cacttctgcattgattgaagcagggaatgtacctgctttgtgtgttacattaatacaaat
atgaaagaaaatatatgtgaagtgacatgatgcaatggaaagaacataaatttggggtct
ttgcattccaatatggcattaatgagcagtgtgattttgcccaagttgttaaatgtttct
ctcaatctgatattcttcaccttcaaagtaggaagccacattttgtgatagacatcgtgc
tgctcaccagtatttctggctctcatgccttgagccaaaacgaaggaatgttattctctt
ccccattgagtttatgcatgatgccataacttgttttgggcaatgaggtataagtggaag
taatatgtcatttctggaaagaggcattaattggcattgtgaaactttacagaaatgtct
cttttctcgaacaattttggaagcatgtgttgatatcatatagacctgcaaggctgtgcc
accagtgaaggacaagtgcctatgagaatcacctgtatctgtaaatcttctattttaagc
tactgagattggcttctacaggataacctaccttatcctgactgagcatcgctgtaggat
taatgcaagttttaagtgaaataaggtacataaagcacatagctgactgcttggtaatgc
tgattaataggtgttggttctttttcttctttttctttaagatcttgtgcattaaaagaa
aaaagtgaatctgcttacaataatataaacttcataaggttttcccctcactcactccat
tctttcctatgaccttggtacctctccttcattttcccctggctcacaaaaaccagctat
tatagccagaggtaaatataaaataaaataaaataaaactttataaacatttcctcactc
ctcttagtggcagtctcaagaacttgcagatggttaaaatcacctggaattgcatttttg
gcccccaaagctgcaagggtagccctctctggattatcttccttcaatgccatgacttgt
tgagggactgtaatcctgtggtacaggtactgggaattggttaagagtatgggcattgca
gttgaactccttggacactcgtctctgcttacttcattatgagttagggatgttgataag
ttagtttctctaaactcagcttcaccattcttagatgcagtgcctatttcatagaaatag
gccacttcccaagaaccagagcagttctgaagagtattttctgaagagtgttttccatta
tgtttacctcagggtcacaatttcccttggtgtaattagtctgagaattagctatatatc
tgttaaacttattttggtcttaaataacttttcttaaatttaTTTGCAGGACACAGGAAA
TGaaa
Primer
(+)TGGAAGGGAGACAGTATAACCAA
(+)CACCATTTCCTGTGTCCTGCAAA


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