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Mouse element [ mm1985 ]


Position: chr13:15,031,300-15,036,337 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCCCCACCAACAGTTATTTTCtagtttcttgtctactatagatatactgcaaattaaac
acgcaaatcataacatttgttgttaaggtccacatatcagagagaatatgtggcatttat
cgatgtttagattctgtcagtcagctttcaagattactggacatgaggctccttacaact
cctagttattgtgaatagagttgctatgaacttggttgactgtgtatgtctgtatcagga
aatgggatcccttgtggggtaaacccagaaagtaataagtttagttcctacagcgagtct
tgtactagtgttcttgggaattgtcacactgatttccataatgacatcaccaacttgcta
tcccttcaacagtgcatgacagtttcctagttcaacagcatttgttgtctctttttctta
atcttaatcattatgacttgaaagatgaagccttaaaggaattttaatttgcatctttct
gaatactaagagaatcctacttttaaaaaaatgtagccatttgtaattcttttctttgga
actctctgatcagttctgaaacctacttttaattaggttgcttgttttcttggagttttg
ggttttatatgtttttgttgttcattttccttttggtttacaactaattcattggccttt
gagaatttaatgcacaaatactgtattacatctttatcaccccacctttgtgcacctcaa
ttcctctcgtgttctccctactccctctaaaatttatgactccttctttaattattattc
taaaaacacatagcatatacatacctatgtgtccatatatatatataaataaaatgtgct
aaatctatttaacgatgctcatatgtgcatgtgtttagggctgaccatttggaattggat
aacccatctgaagctcatcactggtacaaactaattctccctttgttaatagccattaat
tgtctatagatcttcatttgatggtgaaaccctgtggcgtgtcaactaatgtcatcgtgt
aagtcttgtttaagtgaccagattgttaagaattcatgagtgtcaactcctgtaatatat
agaggacagaattttgcagaaaatttcctagtcctctgtctcttacaatccttctacttt
ctcttctataatattccctttgccttacaaagggtatgttataggtatatttaatgaagc
tgcataccacattattctcagacaataacagttgtgactttctgtgctagtctacatctg
ctgcaaagagaaggttcttggatgaggagggagaaggttcactcatctgtggatttatgt
gtctaaaacgcagttagcaattaactcatttaggaacgtggcaatagtgtcttctctagg
atacacaacctcactagctagaggaagttgactaggcttacaattacaggaataataact
gaataggtcataagtccacttatacagctgttgtttacctccttcccaaggtataagtgt
cattgttgccattgttgcatgttaattttgctgtgctgggaactgttggtcattattgca
gttcataagatatagctggatagaacttttaattaccttcttctttggttgtttatataa
taccttcagatagtgtgagagctagtcctcagggaggacacttccatgtgaattccagtt
ccattattccaagtcttgtgtgcaaacaaactatgtgaagtctccagcaatggggcccaa
atttctggttctgagaggcaatcaaaaacaatggcagtagcctcttttgttttaggagtc
tcttggaatcctttaacaaacaattcagaggcactgggttttgctagatagtcagtctgt
gctttttggagaaagctgtagccatccagcggccagggatgaactgggtttacctgaaag
ggggcctggaaacgaagaaggggagggggcaagagaagaatgaagccaagacaaggttct
aatcaaggctccaagattaatattcagtaccgcgtttatgtaaggaaagcccacagaacc
catcctttgttttgccaagcagggtcagcatagcagtctaatcttctaagttcctgtggg
aacttgcaagtgcaaccaaggcagatggatccaccaaggtcgataaggtccactgtggca
agcgctcaaggtctgttcagcctgctcaaggttgggaagggcacagaaatcatttatcac
gcaaagtggtatcatttcatttaagttattcatatatttatatacttacatttatatgca
ttgtatattttcataaaaataaatgcctttatgtgacttttttatcattcctcatggtct
aagtttgccatggggtttttctggccttgtctactgagtgttctgtatgtttcttgtatc
tggttaggcatgtctttccttagtttggggaagttttcttctgtgatcttgttgaaaatc
tgctctatgctgtggacctgggattcttctccctcacctatgcttataaatcaaatattt
agtctttccatggagtcccataatttgtgcatgttcatttcctatgtttcttataacttt
cataattgttgattatgctgtctcgttcctctgctttatctttgagttgtgatatttgat
ctactgtatctattaaagcctagacccaaacattcaccactctcttgatttatttgttgt
tttaaggaaattgattctttcgtgtaagttggtgaatttattaaagtaaaattgtttgtg
tttgctgtgaatatctgtgaaatctctgagaagggtcacttctcatatacctactcttgt
ttttttctcatatacctaatttgttttttcttctttttcccctaatgagactagctagat
gtttataactgtggactatattataaaataactgttgctcttctctagtgcaatgttgcc
ttttgatttctgccctgatagtagtcatttctcttttctactttgaattatctgtgttta
ttttatagttttttcttttaaattataactgaagtataattacatcactcccttctctct
tatcagcctttgactgccttaaacctcttcttcctatgtcctgtcactccaaccccttgc
atgccctttggtttctattaaattgttggcatccttttcttttattaatgttgttacata
cacataaacacattcacagacatatacataaagtcatatatatatatacatatatataca
tatatatatatacatatatgtatacacatgtatgtatataccctactgtgaatgtatatg
cagctgagtcattgacttaagacttttcttctttattaatacatatatgtatatatatat
atatgtatatatatatatatatccagagagatagagagttcaattccttcttaaatattg
ccttagcaataacttacaaagtgctaaatattgtacttttatttcatttttcctatatgc
tttctaaatcttgctttgactcaaagactatttagaagtgaattgtttcatttataaata
tttatataaaagttaaagagttttttgtattgaaaatttcagggctggcctggatactgg
gtaggccattgttgtgctctttcctggggaagactatctctccttcttctagcactcctt
ggttacctgtcattcccagtatagaactaaggacttcttaggctttccctgctcttgttt
gcaatgtgtgttatccttgttcagctcatgtttagtgagtcatgttcctgagactttatg
actatagcttctgatatttataagatttccaagataacacagtgttactaaactctatga
tcttctggaacttgcagtcttttacttcctcttgcaatgcctgagccctagttatcagaa
tgtatcaaaataatcatctctgaaaacatgcatacaagaaatattacacagtctgtgaag
gttggatttctatatttgtgaatatacatatagatatatatacatatagatacatatcta
tgaaagtaacaattacttttttaaaaggacatgaatttgaaagaatttctgtatcactaa
cagctctactgtctttctctttgtagttaccatggtggctaggactctgtacatatcttg
aaaaccatagggccttcaaggccctcatatatgctcagtatagctgggctctgacatcat
cgtcaccttctactttggctaagccaaatgttcccctgaatttcactgcaaatttcctta
tggtaaggttacatttgagggtgataatgagatctttgtgtatgggaacaatattattgc
ctactatgtgaacaatgtgaaactacagtgcagtactccagaggcagcagttcagatggt
acagtgggtgaactttgctgatagtgataaaactccagtcagaatttgtgtgatctccac
cataggaatcacatatcacaacaagcaggtcactgaagatacagaggaggaagagatggg
aatctcaggacttctgaatgcccactgtaaagtaaggacttttttgaaagcaaatgagtg
accctggctattactgttttgtatcccctgttgtgtttctgtaaacatgtcttagagtct
ttttgccagaatttcccccaagaccaactgctgattcctcaactgcactaaccagcccca
gttgagaagtgaagttgtatgagaatatgttctgtttagattttaagaggttttcagaga
gccagcataaaagggataccacatgtaaagaaaatggctcatatgaagagaaacagaaga
tgcaggcagagcagagaagaaaaagggctgatgtccaagttacagaggaggggaatgagt
ttcaataggtactgactacttacatcaaggccaaggacttttaggctcacttgctatggt
agtttaaataggtatggcgtccacattctcatgagtctgaacgtttggcccatagggaga
ggcactattaggaggtttggccttgttgaagaccatATGACCTTATTGGAGGCCTTCT
Primer
(+)TTCCCCACCAACAGTTATTTTC
(+)AGAAGGCCTCCAATAAGGTCAT


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