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Human element [ hs1984 ]


Position: chr5:85,679,065-85,686,102 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NBPF22P - COX7C

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCACCTACAGAACAGTGCCAATtattagtgttaaaagcttgtgttgcttcttgacataat
tttgaattctctattctgttaataggattaatgtcagagcaaaaattcttttaatttaaa
ataaaactttatggagtgtgtgaatgatgtctttaccaggtgaatacaattctacgtatt
aataatgccatctttcaacaaaaagggaaagatatatatatatatatatgtaatcacaat
gaatcacattgaacatacatgaatatggatgttcccagtgtgaatgctcagttaccttat
aaatcatgcctacaaggtgctttatggtttgcaggtaatcatgacaagcagtaggcacag
ttatcgccctacatatagccagaagtgtccacgaagagaaaataatcttagaagaaaact
aagactactttctcagatgatcttacagaattttcacccaaagcaaaggcatcttttgct
gctgtgtgacctctgaggaaagtccagagaccaggaaaatcaaactttcagttgatatga
tgctgctctgttctccgctctaggtgagatcagacttcctgacgatgctactttaaagaa
tctcctctcctttgcctgtgtgttgataacttttgtcagtttctgccactctgataacag
taatgtgtaaataaagttgtttggaatgtatttgtatatttactaagaaaattaaatttt
ttttctaagggtaactaaacacgtgtttatttttttccattttccttccaaatggaaagg
gaaaatgctttactccaccattgaaactttgtgaagctttctctttttgaacatttagaa
cttactgtaaatttttattaatgtattacttgaattttcaaattcagaatcagacacact
tgtacaaatctgtcctactacttaaaagctatgtaccctggactctcaatttctctgaaa
ctcagtttcctcatctataaatagaatgctaccagtgcccacctcacaaattgttatgtt
caatgggacataatgtgtttaatcagtgttatcaacattataaacattttattattgttg
caatcataataataaagagtattcatttcaattgtttaataaacactttagtttaattct
aatatcttccagtaagtctgagtataaagatattgtatttatacagacagcttttaataa
tttccttttgtatttggtaaacctttattatttggaagaatatatttgattaacacaaat
actcaaattgagacaacatgaaccaaacacaaatcattgaaattagtttgattgttggca
aatctctgtatcctcagaataaattatgcaaacaactcaaagactgaacaaataaaacaa
acactggaaatattcttggggattttatgttatctatggaaagcatgaaaaactaattct
tccattttctgttttcatgaccatcctttaagagatgtcagaaatgcatttggaaactaa
atcaagatcacaaaattgtacaattcaaaatgcacagaaacatgtatttccctagtttat
tacttcaaaagtctctatgaaaccttagtatttcttaaacttatatattatactatgata
gcaggaatttcttttcttaatgcagctattccaactacgtcaaataatttgaatcccaaa
tattttcgttttggcattaacaatatgacaaaggaaaaacctttaggagaaaaagaagat
atcatagactgagatgtaaaatatacacaaggaaaaagtggcaattatgtttaactagca
tcgtccctctgaacgtgacatacactgagcaattgttctcaacatggaatcacttacatc
agaatcactggaggcatttttaaacattcatccccaggacatgagtcagactccccaaat
caaatctccagaactaaaatctgagaacctgcatatttaacaagctcccaaggtgatttt
tatacacatgaaaattgataagctctcaccttagactgattcacctgatctgtacccaaa
ggtttcagaaaaacgattaggtaaagaggagcctaaagcagttgtacaaaaattccaatt
ttggtgtatatagttagttcagtgttcgtctttgtgcaaaatagctgatctattattcta
tgagctatcattagtaggggatttactaagtctcatatactgtgtgacaactgcttagca
tactcattttatctttatctcctaactccataaactaaatactactatccctattttaca
gatgagaagaaatgagatcagtaagattaagtacttgcccgaagtattttgattagtaaa
gaacagaaaatgaatttttaactcaggcttgaatgatttcaaagctcatatttctgacta
ttatataaataacatctaataggtctctatggcacttggtattaccatacggactcccat
gcaaatactaattaatcttaacttttgaggaaggactgtcttctgtcaacatggtcttgt
cataaaatattttatacctggtactacttattaatgtttatcatatgtttacttacacta
tctccttggatcctcaaaacagttctgtgacatgagacaaagcaaattattgtcatcatc
tgcaaatggagagattaggataataccaagtaccatagggatgtattagaggactgggga
caagaatccacatcttttattgcctgatatattttcttttgctcccactatactgaccca
ctagaagccaagaatttcctatatatccacttgaactcaaacgtttgtctagaaaaaaat
attttaaagacaaaatacggtaaaaatttggccgactgatagcaagtgaagaggtgactt
gcaataataatggtgactttccagggctataaaaactataaacatttttcaatgctgtaa
ttacaaagttttgctctctttccccccactctcttcatcctgccagaagagggtgaaaac
agccactatctgacactactacctatattaaggctgtattatagagttacagtgctaatc
tcttccttacagtcttaagtcttttaatcttgtattttataaaggggaagtataatccta
gctacatatagatgaatcacttgcctattcaacaaacttttattgagtgctcaaaatgca
tgaggacccgtgctagttaccaggagtacagagctgatgaagtcactcccttaattagca
tttactttcacctactcaggattccattgactcctaacttaacatgcaattttagagtgg
agatatttgaagggaagtactttccaagttggcatatattttgttttaaaccttttaagt
ctacagtagaatcatgtattacttgcttacaacagaaatgtaaaattgcctgggaatgac
tacttctctggcacatttatgctttacacttatttatttcaatgtgaaaataaaattgac
ttgaaacttaccacttttctatattcgttgtggtgatttaatttcttttcctagacaagt
tacctcatcaaattaaatgcttttccgtgcccaatgtttcaatgtcataataaactaagt
tattacatggaagttactattacataaatcttgacttgttgggttcctggcctactactc
catagatactttaggcatattttatgcacagatacctggtaaccttatacactgaagaat
cttaaatctcacagaggacatatagtaaacataattttgtttacttttacattgttcttc
taacaaacgggggtctaatcagaagacagaaaccacacagtaatctgaatgaggaatgct
tgatgtaaagaattactgacttataacagggaattagaaaaataaaggattggctaggaa
ggaatacaaagaactctgaaaaatatgagtagaaaatgtatgatatagacactgcctcta
gggtgagatagagtgcccaagtaaaggattacatttggaagaacttccttcccttttggg
ttattttcctagtactgaaatctagatctcataggaaagtaaaaagccttgactctggac
aatggagacattcactgtggctacaaatctccttgagtctgggtgcagggtaggtcactc
agaggaagcaccagtctacctaacagttcagccaagtgctgcaggagattcatggtatgg
cagaaactggccatgttgtaagagctgggcactgcaaaaaccacatgtgctataggagcc
tgtctacaggaactcacctgactctgaagaaaaaaaaaaaaatcccttcacttttcagta
tctcttctgcaccctccactgacaaagtttagcctcggtgcgctagcaaagagaaatatt
atagggtccatctccaggatcgcagagcaggccattcaatgtggatttggagctaaatat
ataactgacacattgatggtagtataattttttatttctagctaacccaattttaagcta
ttttgaagatattgagaatcttggtcattactgtatgtagagggtcactggcatctttta
ataaaactttgtctaatttagcgtaaaatccacagaaagcattagtgactgctatgaaaa
ggtataatgtaaatgtgataccataaatataaaagaaaacaatttagggattatatcgca
gtaatttccataagataagaatcttaaaatttaaaaaggtagatatattttataaaattt
gattagttgtaccaatcaaacatgtgttagaagaacaatttttttaagcaattgtaagtt
tttccaaataaatgagtcagttaagcctaagtaactattccccaaattaggtagaaataa
aaataaaaatttgtttccttaaatttttatataaatatttaactgaaatgtatctcctaa
ataagattttccacacagagagcattgaatagagatgtactaaaagatatgtctagagtc
ctgaaaaaaaatcatagaaaatataccaaatcagccagtaaacaaaagcaatatatagat
atacagaaagctctgggaaaataacagaagaaaaaaaataagtaatacaaaatggcagaa
tgtcttcatatgtgtgtatgagagtcttgatttctcaggacattcactgcaaatatgtgc
atggaaaaagcatttcagaattcatatatttctgtcttctgggatggagtggcagagtca
agggtttgtaaagagtgaaactaggtttcgtctggagtgtttggatgtgtgtttgtatct
gtgtgtctgtgggtgcatgcacaggcatacacacacccattctttgcatggctattaaca
gaagaaaatctggggttcaacaacatggctaaaagcaaaaggtcagtgttttgaagtcat
ttgcaaagtaaagttgcgcttcagagaagcaaggggccagggagttggtcttcagagata
gttcattaggcaaaagagttaaaactgtaaaagaatccaaaagatacagagcaaaagggg
aaaactgtgttttggtaggactctcccattttactctctgatcatgatttatgtcctcag
tatctgcctaaaagagatgaactgattcacctttatcataactagtcattcttgatttca
acttgtgtgtatagtggaagcacacttttatcttactgcaaaatcagattatactaactc
atggtgctagtagcttaacttccctgagcttgttgcttctccatatcttgtttgttgtaa
ccaaagtaagttagagatacaggatattgagttagatatgagttgcaaactccttttccc
attaccaaacctatgtctatggctataaacgcatccatattctcctttccactgatccaa
atgaattcctaatagatacaaatgctcaacatgtactgcaccttcctcttctatcttatc
aatgaatttgttatcatattactcacactccctatagaattataattctttctcttcctt
attctcacagtataaatacatgctctataatctgctatctttgaaacaatccccttttaa
ctctccaggtttttctcatttttctgctccttctgacaaccaaacttataaaatcatttg
tctacagatatctttctctcccttcccattcatattttaacccacaagactctaatattc
atctctgtactccataaaaccacgcttataaattgccaaattgccaaattcaacataaat
attctttttttgtcttattcaatatcttggtagctcagtagtaatgactactctctcatt
aaaacattttttcttgtcttttcagatatactgccttgcctcttctcctaccttctctgt
ttcttttgctgaagttgaatgattatgacaatatcatcaataaattagacttaattagat
tcacctgtgtttctctctggcatgctctctcatcaattgtaaatagttggagttactcat
tatctaaggagtttgaagaatgttaagggggatgagaatgacaatcataattcttttttt
cttaagaatatgcatgtgtttgttttataaagacaaacacatacatcaccactgtcacca
accaccacaatatctttggaaatatgactagggaatttttactttttaaaaatatatgta
gaaaaattagcctacctactgatactggaggctagtttatttgtccgttttttcaaactt
ccaaaagcaacttttcttttagaacaaaacctcttaagagatttttctaatataaataaa
tgacaacttaaaaacacgcttaaaacttataaatgcctaatcctttgaagaaacttacat
cgaataatagcctgatctacagcaccaatttgatgtggccttcatgatgtttattccatc
atgattaccagtatcaaggttttcctcctcagaatttaggtatcaacaaaacaaatattt
taacaagataaaataatagactataaacttttaacatttaaaagaagccaagtgaTCATT
TCCCCTTGTCTCCAGaTt
Primer
(+)TCACCTACAGAACAGTGCCAAT
(+)CACCTGGAGACAAGGGGAAATGA


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