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Human element [ hs1983 ]


Position: chr9:30,935,536-30,940,148 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LINC01242 - ACO1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gcCCTCCAGCACGTACCTTTCTcagaacttcttttcaaccataacaatgtgcctctggaa
ggcatgggccactttatctgtgaattgaccaaggagaggtgtgagggttcagaacaactc
ttgaaggtgcaaaaccagcttgggggccatgctctctttcaggatgttcagaagcaatct
caaaatgagtggggtaaaaccatgcatgtcttggaaggtgccatagccctggagaaggac
atgaaccaggaccttttggatcttcatgcactgggtttggccacacagattttcatctct
gtgactccctggagaggcactttctagctgaggaagtgaaactcatcaagaagatgagtg
gccaacctccacaggctagtcaggccccaggcctggctgggaaggcatctcttgcaaagg
ctcacctttagcatgactaggagcctactgaacctaggtaggtcctaggtctcaaggtcc
tctcttagagtatcagggcttctgcttaagactgcctccagcaactaggcacctttttaa
gcaccttggagccctttcccaagctttgaagcaaatggaaataaagcatttagcagaaaa
aaaaaaaaaaagactatagctttatggggcttataggtctgggattttacttggcaaact
cctaaaatgagttgagattggaaatatctgcctacttgcctttcttcctcactgaaatat
tagcttctacagggcagggattataaatgtcttatgattatttcatgctcagtgcttagt
gtagtatttgccatttgataaatatttaataaatgttttttgacttatattgaataaaac
cttttgcctcattgccattgaaaatcttgattttctagtcagttatcgttaaatgtttag
atgatttttgggagggtgtttccccctgtgacttattaggcttggtgatattcctttatg
aacattccctcagctattaataatttctccaatttcatctgatcctagtagatgcttttt
tttcttgccaaagactattttttcattttactacttatgggaatgcacacttttacatcg
actataattgctatctggaccctatttgcttctcatcttgttaacctgtttagagacttt
aaaatgtgactatgtttacattttacttcacaaacaataggcttcattttggttatcctc
tctgcaaaattactttggatgattggaattctatcacattgttctcccctaattacttat
agtgaattttgtacctataattgcgtagttacttaatttaacagacaaatgttagtgaac
tgttctggactccttaagaataatttgttcctaattaaaaagaatggatcttgagcaaaa
aaaggaaagagagaaaactgccttttatttagccctctactatatttcagattgtgtgta
tttttttctcaatttaacctagtctaaaaataatacttgtaattcctgcgtcttcaatga
agaagcttttctcagatctcttatttctgtaatgactctgaagtccccatttataactct
atcccgcagcatcataccaatcaaatttacagttaagagactgaatttcacacaagtggc
catgacttttagtcgattgatttcactttaacacatcctctctttattcatcttgaattg
caccacacaacagacttccgctcatctccttaattgaaaagttgggtcggaatgattgct
taatttctgtgtcctgtgagaacaaagtgctcactggtgattgcaggactgtggtttcat
taaatttatgccttatgaatttaacaacatttggctatttttgtaatctcactagcaatg
tcagggactgatcggcctggctgcctaatgtcaggagcctgaatcaaaatttgggcattc
tgaattgccattgacatcaattctgccttctttccttaggagttatacatcagtagtcac
agcccttactctgtgtaaatagaaaaaggtatcaggcagtgctgttactgaatacatctg
actagaatcataagtaatacaggacttgctgcaatgatttcatttttacaaagtatatat
ttagtttctttctctcctgatttattcatacaagtatatcacacgcaaataactaattta
tgtgtttttagcagagggaaggaaaaattaaccaataataaaatatacacaattggacaa
gctatgttagaacagagattgtaaatataaaaatcagatattcttacattgctatacaaa
taaatacaaatatttaaactaagctgtgaaggagaaataatatattacatgctattttca
tagttatttttattaaaaaatgagagttatttgatgatgtgtatgtaatgtagaaattat
acattaattgcaaattaaaatttagtgcaaaatgaggtatctggattaagaggtatggct
gttaccattgaaccatatggcaattaggctttggaaaattaagtaattcaactaataaac
ctatttctaaattaagtgttatttattggggaaaatataaaacaccaaaataatacatat
caatagtattaagatttttattaccatagcatttgctacacatgaaaatgaaattatttc
aaacttttgtttgtcttacacagcacggcctccatggagactcatttaattcccaaagga
aaagcaattattaatcctttcttcaatccaatgcattataacctgagtgactgaataccg
attacatgttgtctttctttgttcaagcgtctcctttcctaccctggaacaagagctttc
taagggcaagaactgggttccatccagcaagaaaatcccaggatgtggcattgtaaacat
ggaaaaacaccatggtttctacagtgagataaaggaagacacatcaacatacattacaac
tgcagagcattcttggtaacatggaattgaagaagctttgtaactctctgataacatgtg
aacttccatactaacatctgtagctaatagcttcaaggtcttataattttctcatatttg
tttaatcccttttttctacctcccatgtccttttgtcacagttctgtcagtcagaacaca
agggagaccacaactttcttacttgattcgttattccagatgctggaatgcagcttgagc
caataaaacattatgacagacatccctgttcgaaaccagcctatttgacacacttaaata
tacactttcctccatcaagtactgttttgctcattttgcactgttcgaaaatctcagtac
ctttctagaggcaaaagggaaaaagattttgcaaaaacaaagcatctacataaagtcatg
gataaaagattgtgttctccatgttcccagttgcttacagagaggtgtcttgttcccaca
atagatcgtggtgtgtattacagtggggagtttttgacttttccttcatataaatccttt
ctgcaatgtcggcatacaagccatgtattttcctaacctgcatgaatttatttcactgac
tttataataaactatgtctgattcattttcacacactgagagcttaatgccattcaggtc
aattggtgcagcaatattttctctctttttttaaccttccattttttgggggagatattt
caaaagggaataaaaatagataagtcttgcacgcaatatgttagctcttcaaaaacatta
atggagtggttttgatggtgtattgtattgtagctgaaatatttttcacttcagataatc
cagatttaattctaaggcattattatttggctgaccaacttgtatcatttttttcatctt
gtcttcatacttcctggacacttgttatataaaataacttacaggtttttactttaagtg
aaatgagaagctattgcaaaatttagagtaggggagtggcatgatctcttttaaaaacat
cactttagctgctaattagaaatggatttggggaagcggaagtacacatagaaaataaaa
cctgcatggagattactcaggtagatcaggtgaactagggttgagggatcgggaggaaag
agaagcagatcaactaaagagatattttgagtatagaagcaagccgttttagatagacaa
atattctttgaggacagaatgttctttcatctctttttccggctaaataacacttttttc
ccccaagtctacatctccaggaagccttccttgtcctgcccttgctgtataatggtcttc
tgaatgattccttagtactgtctttatctaacaagagcaaatctctaagcattactttct
tcgtcattctcatcaaacattgaagtgtttagaatcaaggccaacatctttcccttctat
aactcttacaccgaacaaaaattttgacccacactatatttattacgaagaatgtatttg
attgcataaaatagaacgatttaattttgatggcttaaatacatacgtttatataaagag
atatagacataagtgtgcatataagttcatttagttgtccaaaaatgttaggattggcat
atcagtgattattgttcctttccttcactattGCAAGATAGCGTCTCATCACC
Primer
(+)CACCTCCAGCACGTACCTTTCT
(+) GGTGATGAGACGCTATCTTGC


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