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Mouse element [ mm1980 ]


Position: chr13:15,713,703-15,718,782 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAAAATGGTTAGCGAGATACCGccttttcacacatttttacagccaggtaaccatgctgg
gaaatttttgaaatgtaatctttgccacttttgttctgatgggatctgttcaaaaggcat
ctcagaacaggcacgggcccttacgtcgtgctttggttgcttagacttagctggaacagt
aacactgaaccaactttgacaagtctgaagctggagcaacacggacaagcaacaacaaac
tctgaagtgggaaaaacttcactttgtacttttttaaaaggactttttttgtacagtgcg
tttggatcatattctctttgcttgtctaactcttcctagattcacccccgttcagctttg
tttcccctcctccccaagactagtttgtgctgcttgggatgttcggttgatttaccagga
gctacactcttacagaaaactgcatccctgtcttcccccagctaagagttactggcagct
ccacattgagaggcggattatgtgcccaactcttccctccatgctgggatttagcctgct
ttgggcttgcacaaggtttggtctgctgttgcaaatgctccgacttcatgagtgcggctg
ccctgctctgtccaggagaagctgttaccttgtagtcgtccactgcctctgcgtacactc
tttccatccctgtttctacagtgaccctggaaccttggagggagcagtggatcaggggag
ggcaggtacattttctttagtgctgagccttctgaagtcctactctctaccaaatggcca
gctgtgggtctctatgtaaacaaccatttactacaaaacgaagcctctcagatgagggtt
gcttctgtttagcagaataatagtagttaggctttccctgaaggtctgcgacttgtctgg
ccataggttctcagcttgctaatgggacctgggatgggtttcaccttatggagtggaatt
taaatctaatcagaaacttccgtgatgtatgtgtcagtgttgcaccagagagcttggttt
gtcaggccagtcttttctcctccagtcgtttgtattttacctgcagcactatgaaagcta
accagtatctgagccatctctgtggcttgagtcctctgtccctttcgtttctataacatg
aagttcccacttggggctgttatggggacacaagcttcagtctaaagagctgagcaaaca
ctggaattattgcacttctctaggaaaaaaggaaaggaaaggaaaggaaaggaaaggaaa
ggaaaggaaaggaggacaaaaagaaacaaagactgaaagaaaaacacctagctataacaa
aataaacaaacaaaaaacatattaaaaaaataaaacaaaaacctgaagagtattttgtgt
tggtcaactactcctgagcatgaggctaaagccattctcactccactggacaaaactgct
gttccttctcccagtaggtatcaattgccaatggctacttaggggtgggactttgtgccc
acttctccctgctggggttttgtctggctaagcttcttgctattggtgggtattaacatg
gagacctctagctggacaatgcggaggctttggagcattgagtcctaaatggaatgtctt
tatcacacccgtccccccagtacttatagctcagagatgtatgtggaagaagagacaaaa
gatagtaagagccagaggtgtggataattccaaggaagcagtgttttccagacacagcag
gagtgatgtacatacagactcccagcaagtgtgataacatgcattttcacagggccctct
gtgaaggcccttccctgctaacatctgcaaattctttctgtggtgcctgggaagctggtt
tgagccacttaaggtagccagggcttagcttacaggcgtaatgtcatgtgggtccatgca
tgttttacttcctgggaataagttagacgctaaagaagagttatatatttattgaaatgc
attctgatattatctaaatcctgccaaatgcatgtgatatgcatgtatgtcctatcatat
gggccagggtggagggacatgattcctccccacttacaagagaaatcatggagacttgtt
actccagtttaccttacacacacacacacacacacacacacacacacacacacagagaga
gagagagagagagagagagagagagagacagtatgcccattcctgctcacttttttataa
taattattacttaagacttgtcagtgaaagcctgcataatcatctattttaatgaaggta
gtcagaacgagtaaagccagcttgtttaaatggccaaactctgggcttctctgattctgg
gctttagctgtgcagcacctcatgcaaccgttgcatacagggaaggttccccaattcaag
attccctgggaagagatggaatttggtactaaagcagggacagcctgctgcacgaagctt
ctctgtgccttggtgtatgacattcacccatgcaaatgtggcacagctgtgagttttgta
cactctttgtaagagtccttgagcatttcaggagtagctcctcagtcatgaaaggcaggc
atcgggctgtagggctttaacctgcctggtccttccagtgctcccttttgtggcttattt
tcgtgatgtgaagcaaatgtacattgcatcacaatgaactgggcctgaattctccacctt
tccaacttttagcctggggatagacttgggttgtgccggtcactgtttgctgcttctgtt
tgtagggaggagagatttaccttggaagacatggaacttgaatgggaaggaaaagcagag
tgcattccctcccccagtgtggagagggaggaaagcctccttctttggtctatttgctta
gcaatggtcttctttgatgcagtcttttcgtgggcacccactgaagtctcagtgtactca
agttttagaaaaggcagttggccagtctttgttttctttgttgaactgtttattttgctt
tcttcctacaaggttgcctggccctgctctcacagcgcttttctgcatgaattacattcc
tcagagccacaagtctcccagttcttccaggcaatttgactctggcctgtgtgttcagtc
tatagcttccatctgcctgaagtctttgccaagaatacttgctgaatgactaacgtgggg
acctaaagacatgttttaaatgtcattagcgagaagagctgaggttcattcaagtttgta
acttggctattctgtagtcgttattagctttaagatcagtgaaggaagagctactaagcc
ctttgctttcctttgaatgtggagaaggcaactgaaggctgatagtgcaggtttgccctc
ctcgggtctagttagtaaatgtcagctgtcctgtggggaggggccatgtctactccatgt
aagtgaaagccacatttctgagctatctcataatttttatttttgaattttagacattta
tacttgtaaatcttgccatagtgggcaaaagtgcgttaccttctctgtggaaataataaa
catagaaagtatgcagatgctgtttccttctcttctgcgtatcattttttcctaaagcat
agcttatagctggaacagagaagagtaactcctgaattcaaaattatgttttaaacttcc
attactaataacagataattgatcttataatgtgttgaacttcactgcaggtgttaatgg
gatagttatacagttttcaaaattcagctaccttgagaacaaatttctgggagtgaagaa
tggggatagatatacattatatgtattaatatatgtatgttatatatgtgattaatatat
acatatgattaaggtacattatatagatctaagagtttcaaaggataaaataattttaaa
attttagtaaggaattagggagggaaaaatgtataccaagtgatgataaatgaatattca
gagtggaagagtgttttctgcatctgtgcagtgaagtatgatggattgcttgattaaaat
ttttattggcaaaatttttaaaaaagcaaaattccagacaattctgctttaaaattacac
ttgtctgtctgtctgtctgttctgggtgtatacatgtagaccattttatacatgtgtaca
tcaaaagacaacatggaatagggactcatgagactcaggttgtcaggcttggcagtaggc
accttcactatctaagcctcctcagtatgctcacctgcttggtttgttgtttgtttgttt
gtttgtttgtatgttttagcctgtgttttttgtttgcttagttacgtcagttatcttagt
cagctattgttacttatatgtacatgacaatcttgattttactcaagaattttataatgc
caaaccagaactctgtatttatcattaatagacctagagatctttttctgttggaatttc
caagaaggtagacccagattttgtcaagaaaggcagcacatgggtggaaacagtacaaat
ctattcatccccagggctttctggaagtcttgagtgatgtcccagaggctgttgtttctc
tctctctctctctctctctctctctctctctctctctctccctccctccctccctccctc
cctccctccctccctcctccccctcccaagcctgattggaagtaggcttcttctagctga
gcattagtttccacaatggttgagtgttctcagggcacagacttctgtctgcctccctgt
caccattccgtttgacagtaaaagatccatgatttgttcagtagttttggccaacagact
tacttcctgcttcttgtgacctctgatattagtagcttggtaattcctcctgtgtgtctt
aggatcttgggcttgggcctccgtggtgaagaattcattgcctctcagaacaggctctct
tttcctaacattttgtttgctacatgatctatggtaatgtttcgttcctgggtttcagca
tataactccagaaggttcaaacattagctcatacattctgattatcttcatttatcatgg
tgtcactgggtatccctgGCTGATCTGGAACTCAACTGTG
Primer
(+)gaaaatggttagcgagataccg
(+)CACAGTTGAGTTCCAGATCAGC


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