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Mouse element [ mm1979 ]


Position: chr13:15,701,267-15,705,881 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CACCTGTGTCATCGTAAAAGGAtgatacatatttgtaaccattaagaggtttcaaactct
tgacagcatacattttagaagaacaagatcttggtgctcatggtgtactacagggatact
gaacaggcaggaccattctgtccatgtacagtaggaatcctagattcacctatgcagacc
aaggagaaccaaagactgccttattgaaggcttgtggccacatgtctgggatgtctcctg
aggggccagatcagttccccactgggtaccatgtgtcaatgggcaagagtagcaagagtc
tgagctagtgagtcagtggagacttttcaagtccatgttactcatgtctccatcaagcca
ctggaaaaggtgattattcaaaatgctccacgttcgagaggctattgtaaggtctagggt
gcctctctctgtcatttcatcagggcagtatcttgccactgctttggttttccttccctc
cttttccgctcctcccaaacttgagacctcattttatataaggagaggggcttgtattga
atttggccaatggatttcagtacagaagcccatgcatcctattcctggtctgtttactga
cagtaggtgcaacattgctacctctggtcttgaaatagtctcaaggccagaccatgttgg
cacctaaatcagctaggaggacttgtgcacctggaagtttacttctgttgatttctcatc
tactgtctcctgggcaatcagagcactctgacatcatttggcgaattactccttcagggc
actaactgagttgactttgatctctccttttttaatctacaatttttgtatgtaaatttg
aaaccttaaaagacaatttcccaggatggcatccaagagatcttatagcctgaggatact
aaaactatttcctgggagaaggctgtaactgcagatcaatctccacatgtccttggttat
tccctggccataggttttatgatcaacccatgctgttgtgaggagacctaaaactcaatg
cctctcatgtctaatgaaccccctaatacttggcatgatgacaggcagtgtgaagctgaa
tactgacaactctacccagctcaaatatttttactatgcatttctatttaaagacatatc
aagccagttacatattcataaggttggaagactttttacactaagtgctctgctaggaca
cacttttcatatctgggttttgtatcgaaggcctctggtatcacagtcaagccttgtgta
agtctgtaataaatcatctttgcagccatgcttgtggatagtccactgcttaccatggct
ctgcagacccacccctacctactggaattttaattccctcagtaaaattgattccaccag
gtctgcacattattctccctgtcttccatttagaccgttagtttcctgacagtagagtac
acagcacttagcagctggtttgtggaaccatcagtcaggaaattgtatgataaataggag
gtagccaggtttagtggcacttccttctgcttcagcagtttttgcctgactttggagaag
tcatcatggagtgttttgtcacgtcctggggcaaaagatggctgtggtgctgtaacagat
tatacatacattgagttatgatgtgccccaactgcactgctcatgtgtgaaaaataaacc
ttgaggtggcagatttcgatggctgctggcaacagggacagacctttttgggtctgtgat
ggaatatgctgctgatgcacagaaacaacaaaccacgatgcaaggtgaggcaggcattta
tggactggcatagtcttctaagtgctattgggatcactcccgtgtgatgccacacatgtt
agaggagtgcttgtcctgggttatattctttatcatttctgggtatgtcaagcattcctt
gaatcaaaagagggttgtctttgccagttccccccaaaatgtggcttatttccatgaata
accaataaaagctacaattgttcacatgtgctgtttaaatcctgtttaaatttaatcaat
agagaaccatatgaatcggaaaagagcaaactaaaaccctttgtcctttagttatataac
atgacatctattaattttctgtcctttatttagacccagttccagaattaagaattagta
aatttccttgaccataacacttggtataacagtgctacaagttgtgtttagaatttaact
ttcaaactcacaaagtgctgtaaacctaacaggtgaggacttcactaaatgccagagtaa
tgcacttacatctacttatctgatggatgaatgttaatagtacagtcatgcagcaaaatg
gaaggaagtaaaactcttatcttccaactcagacacagttgtcacagtgtcacttgagac
agactcatgtcagaagctcttcagaagtggacttttctttacagttgcttggtttacata
cagttctattaaatgtggttcccaagaaagatgacaggcctgaggagaagggtgctgcag
agccaagcttgttctggtgtgggaaggaaggaagtcctgcccatatttgatgatcacctg
tctttactctagattggagcgtgattaatgtggatgcttttttaaaaattaaatttaaag
ttcagacacattccgtaagaatttggccaatttttcaactagtctcaaagactgttccat
ttagttttatattgtcataaggaggatggataagataactttcatcaaaactggttaaat
ataatagggatattttactttttatataaggaatatttggttttcctatagggttgcttt
tcatctcatggttactgagttaagtgtaacattgaatttgccacatggctgaataaactt
ctacctgcaactcaaactcagcaagccattacatgagaattggcttacatcttttgagca
ccaattgctaaacttaacatacagtagtttttcatgtgtacttacgaattgtgtgaggtg
tgacaagtgactagataatgtcactggatgcatttcctggcgatgccacagtgaccctgt
actgttacctctcgccttacctgatagtacaaccaggagcattcactgagtagagagcac
agctcactttcacagactcttgtgctattttctaagtttagaacattggggaatactaat
gaaaatgcaattttgtgtcgctctttggtgggtcacccatatttagtgagggcgtactca
cagttttcccctcatacctttctgttctaagtatgcttagatctttaaaggaaggccaca
aggggaaaagttgggggtgggggaggaagtgaagcatagcttaccttctaaaagaagaaa
gattgaagaaaaattgggaagtagatggatgtagagggaagaaaatgagatgcttctgaa
ttcatcactgtgatcgtcacctaggtccacttacatttatgaactggtgttctcagttac
ggtgcatcatcgctgcctcaggaggtacagtgcacacacatgcctggtgtgcttgcacag
tttcccaaaccagtcactgttctggatgcaggaaacctgcttatcaagcttttgtttgac
ttgcctttaagcctgctaattataattttcagaatccttaactaactaggtaccattcta
aagtttgcttgctgtgcatatcagtccccaagagagctttgctgtgacagctgactgtca
gtgctcaatggcactatttaagaattatctgctgacatatttactataatatcacttagc
acaggtgacaaatgtacaggtttcaggctcccttattttattccttgaaacttggacaaa
acatttggactaaatatcagtcatacttgtagctataaatccattgaagttctgttcact
tttatgtagcagatcagtatagttttttaaaaaaatcatttttttagatttgaagaaaca
acaggtacaattaagaagactctgtaaaagtagaagacacacacacacacacacacacac
acacacacacacaggacccagggactgacagacaggatgggcggaggaacagacaggaac
tataggttcccatggaagccagacaaagatgttagatccccttagagctggacttacaag
tgattttgagccgctggacatggttgttaggaatcaaacttgagtccctctgcaaaagca
gcaagggtgcttaatcactgacccatctctttggtctcagctcttgaaattcctaaaaga
gatttcatactgtaaagttgccttcagttgaaatgccatctcaaagtgttcgctttatat
aaggtgtactttctttccttttcagaccctcctcatcttttccctgccttccatcctcct
gtaccaattgatgccagacatcatgagggccgttaccattatgatccatctcctattcct
ccattacatgtgtaagtattaaaatgttacccattaatgaaatggacctaagctctggct
tttaggcttcaggactctttgttaatgcatgtcttctgggctttggaggtgtgataacag
tgtaagatttactcttaagatacagcaaagctcTATCTGCTCCTGGAGTCACTGA
Primer
(+)CACCTGTGTCATCGTAAAAGGA
(+)tcagtgactccaggagcagata


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