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Mouse element [ mm1978 ]


Position: chr13:15,671,935-15,676,645 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAGCAAGCCAGTAAGCAGTATccctccatggcctcttcatcactcacgcctctaggttc
ctgctggttgagttcctgtcctggcattcattcttcagcgatggactataatagctaaat
aaaccctttcttccccaacttgattttgatcatggtgttttgccacagcaagagaaaccc
taactaagattgtggtttttgtttgttttttaaaaaactaagtcatttttttttaatttt
taaatttaatagggaatggatttttgaaagttagtgttaggaacttgttgtttaaaagat
ttagtattaaattcattccttatatttgataggatcttctgacagcatgatcatcaaata
cattcttgcatttgcagcgtttgataatgaactttaccatttacatggacatattattaa
ccgtggtgttggccagctatggagacagcagccgacagccctgggctgtgtctcccagac
catggaatcctcagtggcatgtggggctggaaagccccaacctgggtttcttttaaaatg
gtatgtaaatgcacaccaaatccacatccatcacttggatctaaactgtactgtaaatta
gcatgcatggctgttgaggtcacactctttaccagaatggctttaacgtaacttggcagc
ttcagcataaaacatcttttgctctgttttccggcaagcacaggcaaaaagcaagtcaaa
actgctttcagtaatgagacctgatctttttaaaagctagagtttcctgtgtctcctgta
cccattttctaatttaccaggtaacacagtcaggactgcagtgccctaaggggaatttcc
tcatttaaaatcctcatctggtggtcatttttcttaaaacttggttatggcagttagtat
ctatgggactttttaattctttagacttactaaaaggctttggtacttggtactgcagta
tgtaagactgcctgtcaaagatgggattataaagaaaggccagagccatataagggcaca
cctaggtcatagagtggaaacattgcttaaaaaggcatccatggattcagaggcccttcc
tgtagctgccctctctcccctttcccagtacccagtctctctctcttccatctggcttct
ctgatcagtttactgactaacatcccagcaaagcatatcccctgacatggtaatatttaa
atgccaagattaaaaattaagattgggttaaaaactgaggctccccacggagccgggact
ctggagatactttgggcatttgcctcccatttatttaaagtgtgtgccaacactatgagt
cctttgtaactgcaggggaaggagttgagatgcatagtatctgcaggccatgaatattgg
taaaagtgaccattcataacggtgttgattgctaagaattactctggagtgcagagtaaa
agagacttcaaaatgacttgccaggggttttgagaccacaaacttagcttctgctgcaga
acgttccacgatggtgtttcagctacctgtacgtatgcacggttaatgtttatgtgtgaa
tactcctggaaacaggcaggagtgaccagcaaagcctaattggtttcaaatggctttggc
caagtctggtgacaaagctctaccctttacactgagaaagccatctacctggctctttaa
aacttgctcatgtaacaggaatcaatggagaaaatttacagacaaattacaaaatgattc
catcagttagaaaagataaacaatttagttttattttttatttttgtaaatctgaaactt
ggacctaatgctatagatattagtgaagattttcagtttactcaaccagtttcaagggaa
tggaattttttaacacaggtataggtgtttttcttctttttctgtttccttggagaattt
taacccatgttcacattgactgcagcaaattaacccatgtaaactcatgttctgttcttt
gaaattttgttgttttgattgaaccattatgtataatttaagttgaacatttcagtaaga
gacctgtagctgggcaggtcagacaagattgcttttctccacattcaaatttggaagttt
ttataaacatggtgtatttgggatctagttgtttcatcagagcaggctatgcaacattga
atgcttcagttctggatatttggcttacctacattgctgtggttcctgctcctaggactg
gttgcatggaaaaactaccttctgtgttcagtttgcagtagtttcttcctccggtctttg
agaaagctcaagacagcctacagcaacctctatttcagacttatttttaatgtagccgtg
ggaagatatgacagtcatttagcactcccctccaaccccaaattatataatgttctatga
aaataaaatctttgagccagctccttcccactttcaggtgggaagaaatcacttcagatc
acatctacctgtgatcatcattaaatgacttcacgcacagaagaaattttgtttcttctc
tctgagggcagcatgaagttttcatccttagggaactgcaacaaatctcatacttcagtg
agcttaccagaagctgaaaggtctacagtttgtatgcaaccttcatacatatcatatcac
gtgcctattgggattcaaaaccaaaaccaaaccaacacattgatggtttatgctgtgttc
cacttgcagaggtaaagacgtatggtttgttcctttatggagagctatatcttctgcttc
tctgtccctgcctctgctattgcaagtacactgttatacttttaattgtgcttctcctta
ttgtgcatgtacactcacacacacacacacacacacacacacacacacacgcacgcacac
acgcacgcaggcaggcacacacgcacatgcacacatggtgaatttctgaggtggcttttc
tgggcaacacatgacacactgggagtctccaccttcattgcagagtatgggcagacatgt
tctcaagcctttttactctcatagccagtcaacctttcagacacttggctaacatgacgc
cacatttgcattgctcaccagggatgcaggccgcacactgcctatcccatccttccttca
tccctgttatttgttactggttacctcttctttcatggtccatgtagaatgtgtgctttc
ttgccttcttatgaattgggggtgactttattgcttcttttacagatccgaatatttatt
gcctttagactttttagtcaatgaattttgctcatcgttattattgttagaaagaatgtt
agaaaattaaaattggtggtattattttctgtagccatgtgaccatataaatctaaataa
agtctttaacaccatgaaggtgatctacttggagaaccaagacttgtttttttaagacag
ttcatgatattggggtgtaggcgtaaattttgcctccttagtgtttgggcatcttcagca
tcctggacattgacttctttcaggcttctatgatcatccttcattgattcttcatccatt
tgccagccctcaagctcttttctgcatttctatggtgttatagactggaccaagacaact
gtgtttctacagttgtgctgggtcttaccttttattctccattctcgtacagtctttgtg
aatcattgggtgagtcaatgcttccttgctccaagaaatgtgtgaaacgatcgtctaaga
aggagaaagtctgatatttcctaatgacttcggaggtccagtccatggatattttgcttc
attgcccttaagatcatggcagggacacatgatagaactagttctgttgaccaggaagag
tagacaaggaagagatggtgtcctacagttccccatcagtgaaagtcctcctttctagta
ctgtaagctgggagtccgacctttaacgcatgggcatctgggagatcctcaagacctgta
ttaaagctgtcacttgaatatcgttagtttctcagcctgcacacaatgtttgtgattgca
ctgagcagtcacaataatctgaaaccattatcgtctttgtctgtgctcattttcctggac
caaagagtggaacctgaggcaaaaccaaagaggactgaactggcccaggagcaatggtgt
acaacttcccagatacttgatgctttagcactggtttctttctgctgtaactcgtgcacc
tgaccttgactgttccacatgtgtctccctttggcatgcttccttgcctagcttccacct
gtatgacattttgaggttatagcctccacttgcttcttgatgccctgttgatgcctacat
tttggaatagcctcatttttcagttcttcagtcttactgtcttactcctgctttgttgat
cttcttgaaccccccaccctccccatgcaaccttaaaagtgctggttctttgacaacctt
cctagttcttggtctggcctacagcagccctgctactccaaacttatcagcactctgctt
tctttgggtcgtccgacttttagtagatgtgtctttaatggggagtatcagttacccact
gttgaatgaacaacccagacaatgatgtttaccttgtggtgctctcatctggtctggtgt
ttgcttccaccaaccacatctggaacatgtgcatattctaacacaacatctagataggta
tgtagcaagGTCTCCATGTTAGGTCTTTGCC
Primer
(+)ggagcaagccagtaagcagtat
(+)GGCAAAGACCTAACATGGAGAC


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