Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1978 ]


Position: chr11:2,846,178-2,848,972 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: KCNQ1OT1 - KCNQ1DN

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACAGGGGCGTTTGGACAGgggaggccgggtgtggatggaagctgtacgatggggcctggg
ccagggattgtgggccagctccgagctcagacattggtctgcacatgtggctggtgcagg
aggcgcagtgtgctgggcctcagcctggacacggctgtcccatgcgcagagacagggtca
cggtggaaagagagtccagagaacatgggaggtgccgtttccctgcggcgggactggggc
tggggcccggcttccccgaccctgctgtcgggcgtgtgccttcatagcccaggaagccag
ttcctggcagggtgggctctgcagccaggccgccagggtgcagacccagaccaatgggag
gccaagggaggcccgcagcccagaccttccgagccctcagcctgctcagctcagtgtcct
tccagggaaatgggcgtttcctgtgggaaggtgccaggggccccgggtgctggaagagca
agcaccacgcgggggggtaggggcgccccagccctctactggccagtgtccctccagtcg
tccagcccttgctgccaggggccccgcccatgtgcctggaatcacaccctggacgcttcc
ttctttgggttagatgtcgtcgtcttcaacaaatattttctgaatgtctgctatgtacta
gactctgggaacacaggggaaagtatgtggacctgcccatgaggaagtcagtacagtggg
gccatgaacaataaacagacaattaattatccttcgcggagctgcgcgggggcagctctc
ccaaagcagtcagtcattcacacttcagtatgaatgagtctccgggtactttgctcagta
acggactggaccagcgcggcctccacgccagggactggggcaagggtggagtttggagta
aagagagaggcagggcaacccctttccacagacactttaccacctccccacattgacaag
ctggctccccagggccacccggagccccttcctcagatcctgtccccattggcatggtct
cagcccctcctgccccagtaccctctccccgaggcctcgtcctccccgccatcctggaaa
cgattttgttgtctgcagagattatgtgtaactgcctgtgagttataagcctccacagca
agcagcctgttacctaaccaggcctggctcatgccaatgtcttgagtaattattgggggg
cgggggctgtccagcccgcagcagaacctctccgagggagtgctattgtttttcatgtca
gctgcattttaaggctacatttcacgtcagctgtgacttggaaggaaagagggcccggcc
tttgaaaaatgaagaaattgagccggggttgggggcggggagggcaggttaacccttcgg
gctccagtattccccagcttcccagggtctcctggcagtaaccaggccagctgggggtca
gaacccgcggccaggcccagcagccgcctcttggcagcgctgatggaaaccgccgtgcgg
ttccgcgcagacagtcacggaaactcaggcagacccggcgttgggtgcgccaggccggtg
tgggagcactttcccccgccccctcctgctgctgcttccccgaaggcctccccagcagac
ctgcagctgggcacccacagggtagaaatgccctggattggctgtggcacaagagggctg
gcccagcacacccagcccaccactgtgctcccagagggagaacagagaggggtgcagagg
gccagagaggcacggggctcccctgggcacccctcgtcttggggcccctgccctgcctcc
actcagaatcccactatgtgcttggagccatgctgggtgctggggagacacactaaccac
ttccccatatgctcacagccagagagacacacaggccagcagcctgtaaaccactgggtg
tggggtgtctggtcctggagtgacaaggacagggaggaagaaagccaggcaggtggccca
tgagccgtggagtaggtggggaaggggacatctccaaggaggtgacatcggagcagtcct
ctaaggagtttggagtcattttcagtcactcacaagccacaggagggcttcagcctgaag
ctcagaggtgatgtgcttagatgtcacagagccgggaggggaacaggctgggctgcagag
aggaggccaggcacagtcacctcgtgttgctgtcccccaggtaggagataagggaccaga
gtcagggcaggtgggagaaggggaggttcttggttcagctgctgctgagacagtgaccct
ggggacagcccaaataagagagaactttgccacccgcagggtcccagagtagcagaagct
tcagggctgatgtgtgcctggtgaatcagcctggccccagacctcctctctctgcttgct
ttcctgtccacaatccagtgcttctgtcctatggtccccagcggctgctcctgcattcac
catcacatctgcattccagcagcaggagggaggtaaaagacatgaaggacaggccccact
cctgtaaaaccctacacagaagcggcccacgtcatccccctttctgtccacccgccggaa
tgtgacgcacgcctgagtcgctgcaagggcccctggggacggagtctctattccaggcag
gcaaacactcagcttaattcagggttctgttgattaaaaaaaaaaagtggggtcgggggg
gcgggggagagcggctatggagacaagtggctgttttgccagagggaaaattccacatgt
ggcttggaggccAGACCAGAAGGACTCAGATAGGA
Primer
(+)ACAGGGGCGTTTGGACAG
(+)TCCTATCTGAGTCCTTCTGGTCT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.