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Mouse element [ mm1975 ]


Position: chr13:15,597,138-15,602,150 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTAGCTCTGGAGGGAGACTGAAggatgggccagtggtacttacgaagaagtgatgaacac
agattgtgcctgctagcatcttctcatatctctggagattttaataaagctgttgaattt
cttttgattcttgttcttacaaatataactgactgtgataaggactcttgactctaaagt
ttgaagactgaagagttcatgtcatacactttccttccagacctgcacctgtcccttgtt
gttagatgagtttgttgttttgtacctgatgcgtcttagcatcactaccaaagcagagca
caacgttctattatgaaactcagcagagggcaaggagctgcttacatagaccgaagcaat
attcctgtggtagccttggaaaggacatgtaagttcctaggattaacagtcagtggatgg
tatcacgtttctgctactagatgaattgctgaatcacattattaaactctgcctcttcct
agatgaaacataactcggacagaggccaaactaactccagaaactgggtaggactacagg
agggtgatttactcttggaaggcgaatgggcagctttgtcatgtgcagtatgcctcttgt
gaagtacacagtatggctgtttctagtaggatgtcttgtgctagttgaaggctttcattt
ttaatgtctttatggggtggaccacaggtcttcctgattatgtttattagcattgtggtt
tgtaatcttttgattaaacctaggtaatacagtggtgggatgcttagaaagactttacat
taagatcaccaagcctgactcctggtttgacaagagggaaacttggggaaagagtgaatt
ctaaaccttgactctctcacatatggaaaataagtggccaaaataatgtttaaaaatgtt
aaagacaatgttttctggcaggtgtatatatattaatctaagttggtgattgttagcata
tgaaaagctattgacttctgggtattttcaaactgatagcagtactgaatgttttatttg
tttaataattattacaccttctgtgctttctagcttagaatacagtactgtttgctagtg
gtaatatttccttctcccttctaatcactgttctaatcactggatttctgtcttatgtaa
cgaagctttttggcttcttggaaagtacgattgggagtgctcataagcatcatagctgtt
gactctgatgccatttttgagtcaggttgaggaagcatcttttgacttaaggcttaaatc
agtactgaatattttgagatagtgtttccttgtcttttgcttttataccttgtagttttc
tctttactcagccgttgatctttgtatgtattctttacagtaattctgatcattgggact
atgctttgttttgaaatgaattggacttttttttgttttttttttttttttttgtttttt
ttttgctttcaactttcttagtctagaaagattcttatcaaatagggtcatctgacctta
gggaatttggattaacacttctcctcagaaataaacagggcccaagtcggcagcctttac
tgcgagtggtgttagatgtctttacagtttcttctatcactactggattatcctagttcc
tgtaagtaggttctagttccttatatttaatggagttttaaagctttattgtacagactt
tttgtagctttattagaaagacaccgcagcaagcagttgcccccacttggcttgtgtagg
ctcttcttgacttgcccttgctctatgtcttgttgacctccaaaaagtttgctttggaat
atagtgcttttctaatggcttccagtttactcttgtcattctcttcaactcttttatgtt
tcattttgttgcttttcagcctctaaaaaacataggacatgagtctacttactggacttt
ctaaaaatatgatggctttcatgctgctaattttgttactctgtgaaatgaacattagta
acattctttgcaattgttaaacttcccaccttatagatttggaaaacaggagggtctttg
tgtgtttgtgtctgtgtatgcatgcacatgtcacatgaaggcctatgtgtgtttatatcc
aagatgcatgcattgacatgccacgggggcatggtgttctaggtagcttatgactgaatc
tatcaaggggtaaaatgacatagtatgatagcctttgaaaaaactttgcctaagagctga
ttcagttttgatttttataatccaagaagggaaatgatcgttctgttgtcattgatccat
gggcagaagaggctcctgtttccctggctaatttgctctaggacttgacgattttagcac
caggctctcacacacttcttcaccatcaggcctttctggttatgttggaagcagcatctt
cttctttactcttcagtgcatgtgtgaatgaatacaaggtggcttttcttaacaaccttt
catatgcttgaaaatatggggtagattgtctgaactttccctatttaatttttctcagag
aattattttactttggttttggctgattttggcctttactgatcaggttttaaggtggcg
attaaaacactttgctctcattaggatctgattggtaatcaacacaagaaatagttctga
aatgctgttggttaggttgtttaccttactggtcttaatatacatttctagttctttctt
gtatggaatagtctggatactgttctttcttatatgagtttggtttacaacttctatgta
tcacatattttcttgatgattattctagctctgttcttccagacatcccattaattggct
atataaaatttgttttaaattaatttgttatttatctaggatattaggtcctcccctctt
tctatagatatattttagagtggtatagtttcctagtgaaggtaaatagaagatacagag
atttcctagttctttccatccccccaaattttcctaccacaaatcagagtccctagcaga
aagatgccattggtacatttggtgaacctatatttatagtctttatctagctaaagtctg
ttttttatgctaagatccactgttggttgtaaatgatgttaatggcacatgtccaccatt
atagtatcctgaagaggagtttcactgccctagaaagcccctgtcctctgcccctcatcc
ttttctccactgctctcgctcttctcttgatctgagaaccactgatttccatagttttgc
tttttctagaccacagcatgcaagccttttggtttggcatgcatactgttagtaatatgc
atttataaatcctccatacctcttcctatccttcacacctcaccttttaatactaagcag
tgtttcattgaccagttgtaccagctgattttcagtttgcttcctgaagggtggtgtcat
ggtcacttatacattttggcagttataaatatagttactgtaaacatttttgatgttctt
ctttctcaagctttctgcttacataaatagcatggtgctgtcttagtagctaactttttg
tcacctatatctatatctgttccttaatgtggagttactgaatccagaagtacacttcta
ggtttgtacatactcagaaatactaagctaatttttccttctaccagtcgtatgtgaatg
tttgttactagtcttttgtaatccagtggaggaaaatatagaaatgttccaattggaggt
agttttcctatgcttttgtagcagattacctcaattaagtcatttaaagcaatttcttta
cgtttataatttcttagctgtggaaactgaaaatcagaagtgaagatctgtgaaggcttt
aagggaggactcttcttgcctttggggctccatctggggctccatccttggcatgcctct
ggcttctgcctcttgtaggtgaactacctgtgactctcttgtcaaacagtgttctctgct
ctgtgtatatatgcgcatgctagcttgcttttattttgtgtgcgtttgtattgaggggtt
gagaccgtttcactatgtagctcaggctggacttgagtttactgtgtaatctaggctagc
ctcgtacttgccgtgcctttcctgcaaacatgggaagtacaggtcataggcatgtgccat
tatggctagcataatagtggtatgtacgcctgtgtgtgtgtgtgcgcgcacgcacatggt
cattacttggtttaggctccaccatcgctcagtataacttcatctctacatactacatct
acagagatcttgtttccaaataaggtcacatgctgaatttcaaaatggacatggagtttt
gcagagaactatttagtccagtatcagtatcttggactttaaatattttgtgattgagtt
ttaaaagtagtgaaatgctagcaaagcagttagagccagatgtgtttgggcacatctgtg
atcctagctctcaggtagttgtctgaggctggcaggccagcctggattatacagcaaggc
cccaatctcagatatcatcaccccaagccagtgaacaaacaaactaaaggagaagcagaa
gcatcgtgaaagaagcaggcagagcagttggggtgctgctgcgcccctcctgttgacgtc
ggcttcagtgccaagcgttatgccccttctgagtgttttctttgttgtgaattcatatat
ttagtcattagtcttatgtatcagcttcatcccaacatttacagagtgcaatatgggctt
gcttagcatagtttcctttattacactgtcacgctgttccttacaataagaactcctttg
ttattgtgatgcaggataggtaagaaatatttgaatgttcgtgttaattacttccagttc
tcaaatgtggatctggtgtagaaccagttggagcaaatagttcagcagtttacacctggg
atgtttgtctagggtgcttcagtcagtgtaactcgctcagtataagagatatgttccttc
aaatagctaagATCTGCCATCTGCAAAAGGTAT
Primer
(+)GTAGCTCTGGAGGGAGACTGAA
(+)ataccttttgcagatggcagat


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