Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1975 ]


Position: chr16:53,813,424-53,817,319 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: FTO(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTGGTGCACTCCCAATTTactctaaacttctacgggcttccttggagaaactggggcag
agatgccgaagactcatttcgggtacaatttagagtttgtttatttatataaatgtaagg
ggtaccagtgcagttttgttacatggatatattgtgtagtggtaaagtctgggtcagctt
ttagtgtaactcatctgaataatgcacattatatccattaatttatagttttatctcaaa
cctcttattaattaatgctagccatggaagctagctagcgcttgtaaatgcctgctgtgt
gttagatgctctagtaggtgttttagacaccctcatctaatcttcatggtgattttctga
tatatcctgaacctgtacaattttctccacttctgtcactactactacaggccaagccac
catcatttcttgcacagacttctgcaccctcaatgtggcctccctacttcaagttttaac
agtcttctccctctcataatccactttccagacataagttggatttattttaaaaatata
tatcaagtgatgtcacctcactgcctataagactcttcagtgacttaatgacaaacagaa
tgagatccttctcctgctctggctgacaagaccagaacaacctgggttctatagctctga
gagctcaccagccactctgtccttgctcgttcactgtgctccagactcactggcttgctt
tctgtccctggaagccaccagactggttcttccttagggcctttgtaccagctgttcttc
ctgcttgggacactctctccccagatctttagtctgggcctggcttcttgtgatttgtgt
cttgcctaaaatgacacccactcaatgtgccttccctgaccagctgagctacagcggttt
ccctctaccgcatcactagattttactttctttctttttgtttgagatggagttttgctc
ttgttgcccaggctggagtgcagtggcatgatctgggctcactgtaaccacctcctgggt
tcaagcgattttcccacctgtagagacggggttttgccatattggtcaggctggtcttga
actcctgacctcaggtgattcacccacctcggcctcccaaagtgctaggattacaggcag
gagccactgagccaccacattcagcctagattttattttcattaaatcgcttgatgcagt
gcagagtgagtttctgctattagactgtctggatttcaatcatggcctcgtcatttactg
gctgtgtgattttggagaagttacttaacttttcaggactttcatcttcttctttataaa
atggaaatattattatatccctccattgtaagaattgaataaggtagtacttagcatctt
ttatggtttctgacacattgtacataatcaaaaaatgttaaatattgctattttaatgta
atgttattaaaatcattgcatattttatagcttatttatttggctatttttctgtctctt
ctaccaggaatataagctttatgagggaaagaatcttatgtgtcacattcccaactgtgc
ccctagagcttagaacagtgcttagcacatagtaggcattcactaaatctttgctgatta
ttaaaatctgagatataattatccctatttttccaattgagtaatcagggttcagagagg
taaagtaacttacccaaggctacgcagctactaaatgctagtagttcctggtatttgtac
tgaatgctgattacaaagaccatgttctttctgttatgccacaatacataagtggatctt
tatttcagattctgtcatttatagcagatgattttcaggttgcctttttatgtaaatgta
acatgactcatgaaatgtaaacagccatttgtgtgaacatgaaaggtcagagccaagagt
taggccacaggcaagttaggaaagtgagatatagcacacccaccacattcagtggtggaa
gaaaagttacctgattcctgccttggagatgtgtagggtagtgaccttggggttgggctg
cctgaggaggttcctatgctttgatttctgaatggacaggatccctaaagtcatcgaccc
tagtttgggctcttgtacttcttctatcatcttattctagttggtggaggcagaggttga
aaaatcaaaatgttggctccttcagcctctaaaaagtaataggcttgaatttgcttttgt
cactaacatgattatggtgcttggtctgtgggggcttcactgatgcattctttttaacag
ccctgtttgtttgtttgtttgtttgtttataagtgagcatagcacagaggaaaaaatata
ggttttggagactggcacatcagggttcagatttctgctgtgctacttcttggctgtgtt
ttggcacgtgaacttctctacacctcagtttctttgtttatgtaatggggattcatatga
caattaaagagagagcttgtctaaagtgtcttatgtagtagtatccccagtttgaccctt
ttgagaatctgatgacagttatggaaccctctccccagacaagtgcccgtatacccagaa
ctttgtatttaatttcatggggttcatgaagcctctgaaactcagcttaagagtccatac
caaccaaggtccttataggaagagcttgtgtttttgttttgttttggctttctgcagtct
cttaataatgtttattgaatgagagaatttaactaatttccggtttccataatcacttta
aactcggtatttgatttccttttccctgggacctgtgacagtgccagcttcatagcctag
tctaggcatgccagttgcccactgtggcaatcaatatctgagcctgtggtttttgcctta
ggtaaactgtagagatggactcatggaatgcttggaaaatttttcagtttatgataatgt
gtaaatgtcgagagccaattattgaggaatggcacctcaaagtatttgggtactctagat
cagacatgaccatcttggtgtgtgaaattttgctaatgcatctttcctaatagaatatac
aatctcagggctagaaagtcttagagatcatttaatttaattcctccagattgattaagt
ggtttgtccaaggtcattcaactggtatagtggcagagctcaggctgtacaaatcaggtg
agtattcttcagctcctcagaagccagtaacttccactcacttgtgtgtgtctgaaattc
attaaaccttcgacacaaagtgcagccattttaatgctgaatgatattcatcactgtctg
aaatgggcttatttatgtacgaatgtttattcctatctcttcctccattctcccaaaatg
taaaccccataagaacaggaatcttgtctgtcttagtcacactcagtatccttagagcct
tgtgtgtagtaggtgtgtagtgaattttggttgaatgagtggcagttctaataatgtcag
aagaattggaatttctttacagaaatctttatcagtaatttaacaaacatcgattgaacc
tattatgtatcaggcactataccaggcacaggtacgaatgagatatggtgctcagcttca
aggagttacagtctaaataccaaaataacagaatcaagagcagcagactaaattgggccc
actgtattttttaaaaatttaatttgactgctgggtgcggtggctcactcctgtaatccc
agcacttcgggagcctgaggtgggtgaatcatgaggtcaggagtccgagaccaacccggc
caagttggtgaaacactgtctctactaaaaaaaaatacaggccaggtgtggtggctcacg
cctataatcccagcgctttgggaggccgaggcgggcggGTCACGAGGAGATCGAGG
Primer
(+)TTTGGTGCACTCCCAATTT
(+)CCTCGATCTCCTCGTGAC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.