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Mouse element [ mm1973 ]


Position: chr13:15,500,437-15,505,580 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGTTACCCAGCATATTGGACATgcaggtatgatggggtaacagtagaccagcaagtgtgt
agaggagccagcatgaacatactacacatgctgtgtgtactttggatagcagatccagag
agttggtgctattcaagtcctttaaagctcaaaagatcatgaatgagttccagagttgga
tactgagctattcatggtgttggagtttgatttgactttggtatgaatgtggcctggttc
ttccctcttgaaataataaggtatataatttattttattttagaggagctcacagctgag
ggactttggactttttaaagagaacttgaatcgtttgtttgtttaagacaaaatctcatt
atgtagctctggctgtcttagaactcattatgtagactaggctgggcttgaggtcttcaa
cttttaaactattcaaaattttcaaggacactgacacttttgaagttggacagtatttta
taatttaatattaatgtaagatcttgaggagaagataatgatatgtttatgtgtgaaggt
tggtcctgatcttgatatagtaggtgacattgttaacactttaattcaggcaagcaaagg
actttgagaggaaattatcttgatgctctgataaaacaccataagaaaaataatttgagg
aggaacagatttgtttcagcttagcgttccacatcacagtctatcaatgaggtgttgtag
taattttccaacacaaatatgccccagcaatgaaaacacaacacaattaatatgaataca
agttgtgcgccaagattgggcaaatctaccactacactaccatcttccccatctatgaga
ctccttagaacttgcagtatctccaggccatgtgcttctgcttgctttccttccacctcc
tcttctgtgtcccgtctcctctctcctactcccccccctctctctcctttcagctccacc
ttcccaatatctgctcaatcaccagctctaggctttatgttacaaattaaggtgggaaga
aggtttataggaaatcacctgagtgctgactgatttctggttcacaaccactcacaggag
aatggaattagcatcaaattacaaatagccccagagctatcctcaacaatgaggaattca
aacggtaaaaacatgtaagcaggagctaacagaaagtccatgcagaagtgctgcttactg
gctttcttccacaggccaatcattttcttgattgaagctccctcttccaaaatggctcta
acttgcatcaagttgaaataggactagctagcacagagatgtagtgaagacagcgtatga
ctcaaatttaacatgcaaataaggtagtctttggagggtttcttttgtaagcattggttt
ggagaagcaatgcatttggatgatcttaattggttgattcctgagggtcttattgtagtt
gctatatgcccagccaccccaaatttattatcttgaaggagtaaataaatgtcagaaaga
gctgttgaggtcccacataagagaaaattaaaattcaggaagaacttttttatcttcctg
tgaactgtaactgaggtcctacttagctccccaagctctgggtttaagggaaggaagttg
ttactgctccaatttataggataggaaaactacagagttggcctcttcatgacaagagct
aaagacccctgatgagtctcagccctacctgactatacaaaactcctcacaaactcccaa
gggaggaaagaattgatcccttcttccttgccaatgctactctcaaagtgcctaagaaaa
accagctttttttatatcatgccgctgctttggtcagcatcatataatgtaataataata
cccaaggtaatcaaatctctaaaagacaaagtcattcaggctctggttctagagctttgt
tgagtttgttgttgttttgttttttcattccaaggctggttgatgtcatagtttacagct
ttcagagaggcagcattccatggcagaagctctgcacagagcaaaaggaatttagagaca
ggaaagaaagggattagaatcctgttgtacccttgaaggacacagccctaataaccaaaa
gacctctcaccatatcgtacatcttaaaatttttccactacctcccaataatgcccagaa
gattgagtctttaacactctggcctttgagatatgtactatgtccaagatttagcaacta
cccaaagggaaagttgaggcctctggtgtatgacagcttctctggtctgcctgggacagg
gtatttgttgttgctgttgctgctgctgttttaaatcattcatttttagctcttaatctc
cattctaaagtatctccttatcctgatggtagaaaacaagaacagttttcttttacttta
cactgatcacatttcttgagaagaatttagaggaatatatgtgacaaatttaagaattaa
tatgacccaagccttttggtaagggtgcaatcaatcactgacacaaatagaagccagctt
gttgtccccatttcctgtaattcagtgaagcagtgtaaagcatgtacttgtatgttattt
aaatgaatcattcttatgacatgaatttgaatgtgctggcaatccttggctattcctcag
ggtctgctagggagagacactactggcatgacagccttaggttggatttcagctgatatg
cccccctgatatgttttcccatttgtaactcctattgccatacctccacacacacataca
ctatgagcttactctgaagataaataacatgttggagtcattgggaatgaggggtataaa
gaaacataaaggagatttagtgagccatctcccacactgcaaactccacaagtttcagaa
ctgaacacccattattttaaatgcgattgtcctggacaggggccagagcacccaagactc
tttccatagagcaccattaaatgcatgagaatcaaaagaaggtaatttcccagctataat
cagaccttcattactagccagctctggagggtaattagtctcttcctcagaattgtttcc
tctccttaaaatctttcgccccaccttacatctttcttatgaattaccctccaggaagcc
cagggccaagcagcccctcccccactaccccagacctctgcatttccacggttctctact
gaagataacagctatgatttacatctgtccttttcaaatagtcctccaagctccaactgt
tcacggataccattctgcttctaagcactgcatgctaatggatgtacctctggaagcagt
ttttggaaatgattagaaaggaaagaatatgtcatttgttggagtgtcgatgaagcagaa
gatacagaggcacaggagaaaagctgctcagagtggctctttggatgccaccaccaaatg
gggttcacatgttccaaaagctacatctcaggcaaatgaggaataaaaagtggatttgac
agttttctgcagtgtataaagcacaaggaaaataactcatactaataaaactcacaccca
cacaagaagggttgtaaaatcaacattcctgcccactagttttgtttggtaaaagggaat
gtctgactagatccatgtttccatcagctgtcaacatactttaccttcttaagaaaatcc
tcccgggaagacacagggtaaaatatcgtccacgtatgggactggggcggaggctcagat
gtcctcctgggaagacaaagagtaaaatatcgtccacgtatgggactggggtggaggctc
aggtgctcagattttggattaattcagtgactagggttgtttgtttgttttgctttgttt
tgttgggtttgttttttgtttttttggttttgggtttttttgtttgtttgtttttttaag
gcaggagagatgactctgcagttaagagcacttgaaacttctgcagaggacctgggttca
gtccccagaacccacatgttggctcacaattatctgtagctcaaattgcaagggggtata
atgccctcttctgtcttctgcagacttcaaaatgagatggtccacatgtatactctcagg
cacacacacatacacataaaataagtaaatctattttatttagcattgttagtgtggggc
ctcgcagaagcagcttcactaactttgggaaacgtttttaggttcctgatgcagcagtcc
aggcatctaccctttaacaagctctccaagtgagtcttatgcctgccaaaacctgagagc
cacttggcttaatgggcatggagctcggaagaagagctacacagaccatccattcatgga
aaaaacagtaatgcagcaatcctctgcaagaacacagacaaaaacaaagtccccttcctg
aagcagctccctttactaggagagaaagtgtggagagatcttaaattcagtgatggtcct
tgtatgtgcttattgttagaaactgggtgaaaacacagggtgcacttaaagaaagtgaaa
aagaaaaataaaaaatgaaaaggcttcccatggagataaaaaattgtatatcatcaaata
gacttttaataaaaagatctctatgtcagtcagatcccaactactgtaagatgtactcac
aactactcatagattgggacttcagtcagtgtttagttgtccctagtgcttttgcgactg
tgggaccctatcacatgcatggtgggtcaaaactgctcacctcacaaccaaagtgtgaaa
gagtgaggaagaggccaaggtcccacatttcttctaaggtcacacttccagaaaggtttt
tattacccggtcatagtgctattgtctattcaaggctattcaagttcaagactaaggcct
gaacacatggacatttagagacatttatgaactagtctacagcagaagaatatgagcagt
cagataggcaagatatgagggtatttagcaaggtaagattggtgctacattaagtatccc
accacagagaatgggttaagccattcaaattgaaggtagaaagtatatttcattttgctc
tgttatggtttgagtttgaaatgcaccccaaagggcgtcatcagttttgatacttcatcc
ctaaataatgacactcgactggGAAGTGGTAGAGCATTTGGGAC
Primer
(+)GGTTACCCAGCATATTGGACAT
(+)gtcccaaatgctctaccacttc


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