Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1973 ]


Position: chr12:123,546,924-123,551,725 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR4304 - LOC100507091

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAaaTATCTAACCCCTGGGCACTGctgctggctgtggggctgggggaatcctggaggtgc
ctgtggacagcattgcccacttagctccagaaatcccagggaagggacaataagggggac
ggggcaggggcagaggctatttaccagcaaaaaaaagtacagcactcttgctcttggggc
tagatgtatctaggatttcagaatatcctgaactttagacaggtaaagctgcatatctca
gcagcatccaataaacaaatacattgaactctctgcagtgaaagacatgaatatagaata
cataaagactataaatagcctcacttggactataaatagcctcacctcagttcaggaaaa
attttgctgccaaatgagttacaaaaaagtgtctggttttcagtgtgctggattttggaa
ttgaggataaggaattgtggatctgcacatcaatgttttcaccacatatctgtgtgaacc
aactgcatatcacccctgcttcaccccactaccaatgcaggacagatgaggggtgacatg
tgctctgcctctaaaactcaccaggccctgtgaccttggggaacacagtccaaagagatg
agtcacacacgaaagcaaatgtgcacacacacacaaacagcaatgcctataaatatattc
ataacacaggcctgcgggcacataggtccacaaggacgcagagcccagctctgctgacgg
aacctgtgttgccccagggcccgctgacccctgctcagggcaaggcctgtgtttccaggc
ctgtgactgggcaagcaagggtaggcaggaatgaggaacacggcagggcttggtggttga
gagcttcctcatctctgcagtgtggagaaggggcaggtatgccaggcagacctggctctg
gtaccagcactgccactgcccagccggtggccttagataggtggccttgggcaggtggcc
tgcgcccctggctgggctgcatttcttcacctgcaaagtctgagtgaaacaggcctcttg
ggcttggtgagaggcacacaggagcccccagggcttggcacacagctggtgcttaggaag
tgcttgctgactctgttctgtgacgttgcttaaatgcataatatttaaaagagggggcta
aaataagtggccccttcagtcccagaagcgtctccctctcccccagggctctctttggag
gcagagccccttgtgggtctctgtcctacaccagggctctctggtcagaatgcagatgag
acctactggatgctctggctgccaagagcagcccccacgagaccaggctccaggtctgga
aggaaaagcctagagcagggacccctggaggaggggtcacagcattgcaggcagaactca
ggctttgacatcagaatggtgctctgatcacacagctccacccctcacttggtcttaagg
aagttacttaaactctctgagcctcagttcttcattttataggtgaaggtatgtggacct
tcattttataggtatgtggacctagtccaataccacacacacctcatagggtagtaaggg
gaataaattaacagacaatcaatgtaaagcacccagcacacaacacccaagcaacagcag
cagccgctattattactataatgatgatggtgatggtgatggtgatgctggggatcagcc
ctgctaaagaactgtgtccccacactcaaaacagtcaggactaggggaaacaaatcattg
atatcattttgtcactatgcattattgccagccttcccagggttggggccgttgctcact
gtttcgaccctcccagcaacgctgccagcaggcagacagacgcactctccccactccaaa
ttggaaaatggaaaccaagagagcgacagggacttggtcaaggtcatcgggcaagtcagt
agcagggaagggatgagaactcctcattctgggcccagggtgacaccaaaccgatcccaa
ccagcaccccaaggcctgcagcccacaggaggctctcagccaccacggggcacaggtatg
tgcaggagcatcaagacctgggctgggggtggcacagggcaggggagctgaggggagtag
ggaaccaagacatctttcaactggcccaagcccatcgcgcacagtctggctcctctatct
ttggcggggagcctggggctatttcgggaagctctgcgcacagcccgccacttccctgcc
aggctgactgggtcaaaaacaaaacgagcccagcaacacccctgtgtcaacagggtggga
agtgaggaggcactgaacagccccaaatacaacagcaggaacaggagaaaatcagggaag
gttgtgggggtaagcacatcaccctcaccctgcaaaaaaaagctagtgggaaacaaacaa
cacaatgaatcagatgcagcaggacacagggagtgactagctctggggccagaccacgtt
cacattcaagccttgtctttgagcaagtcctttacctgctccaggcctcagtgtacccat
ttgtggaccaccacccaccttggagggttgagtgggattaaatgaggtgacagtgaggca
ctgggcacctgagatgtcctcagcctgggcctgccatgccctgctcacccttcagagcct
tgctcagagtctcccattgggacagctgagctacagcccccattctgcaggcacttgcca
cccacagccgctggaggcccctggacggctgcacaaggccctgtccatccttgtgcaact
gcagtgctgagcctggagcagctgcctcatcggtctgtgaggtcaagctcaaggggccac
ccagaaggctttccgagagcatccaaaaaaccagaagaaagggtgaagaggtccccgatg
gcatccagggttcccccatagccctccagtcactgtcatggggcaggcagcaggactcag
ctcatctctagctgctgctttgcaggggcagcatgagagccacctggtgccagggacagc
gcacagggctctgcccagagcaggtgcacagcagacactggagacggagtcaatggggaa
ccaacggggctggcaggagaggcaggaggatgcaagacaggaacaaccatttatggggca
tttccaaggcaccaggctctgtgggagcagctgacacaccttgtcccagcagattatgtc
tttttgacaggtaaaagcaaggggcccagaaaagggaaaggattttggcaagttggtgtg
agacttgcaggaggccagcaagctcagaagggctgttcattttaaatgattaattgtatg
taaagcctgtgggtgtgaggatgaggaggcagctccccaacaggcaccctgggctggcct
gggagccttaggggacatcatccccaaggtggtctgttggttctctcacagcaggaggat
gggaaggaatggatggtggtcaggcagccacaggggcactggtactggcaacactcagca
cttcctgcattcaggggcaccctctgtcatcctggacagcagagacttctagaagtcaga
tgcaggaagtgcttcccagagcaagattgtctttcattaactgctggagacgtggggcag
agactcacccaaggtctgcagcaggcctaagccttgtcccttgttgtatccagccctgta
tgcgtttgtgtgcgtgtgtgtagacaaatgtcaccttcacagctgaggtgtcagtgtgtc
tcatctgcgatgggccaggggaaggagatgaaagctcttgcaggtgccatgtgttgaaat
ggccactccaccatgtgcccagtgatgtatccgagaggagctcagggagccagggctgga
tgcaggcagacagcctggccaggaaggaggccaagtgtcaagatcgagcaaggggagggc
ctgacgaggggtagagaagaccaagctgggaaacacacggagtgggctggtgcaggcagg
ggcagagggtgaggggccgtcactgtagatgccctgaagactgagcattgtgggtactcc
ccacaacccacaaactcatgagccagccaggagcaagagcaggggtctggctatgtatgc
caccatcatctccactgcctttgtggagtgagtccgtgacctcaccccacagctgttggg
ggtgggggcatgaacctctgagacaagcacagactgagagctgggagacagacagactcc
tctctgcaatgcccatcctgtgagaggggcttaaccaccccctgggatgggctacaaggt
actgctattagagaaagttcctatactgaacagtttgccccactgggactcaacctgggg
tcttgattgactttttggagccacatgcagcctttctcctccaggacaccttaaaatacg
tgtctgactagtacaccctctccacagtggctgcctactggaccccctcggctgctctgg
gctctctgattctactcgtggaggcaaagtcgcccttgctgatgacagggcctgaggctg
ctaaaagccctgggtgtgtttcctgggacccgctgccaggccacactccccggccagtgc
agtaggtttgccctttatctggtgacattctgcctgctgggtgcaaggggttgaatagtg
cagccccctccccaaattcacatctaactagagcctcagaatgtgaccttatttggaaat
agggtatttgtggatatgattagtgaaggatttctagatgaaatcatactggattgagga
tgggctcaaaacccaatgactggtgttcttataagaagaggaGAGAGTCTACAGCCATGG
CC
Primer
(+)caccTATCTAACCCCTGGGCACTG
(+)GGCCATGGCTGTAGACTCTC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.