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Mouse element [ mm1972 ]


Position: chr13:15,491,206-15,496,644 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCTGAGTGGTCAAGGTAAAAGcaatactcttcccttaggactgcgcaaagccctccctg
ttgtaaaaagagtaaatctagaacatagtggttctgtaggcctacttcagagaggaaggg
tagggactcttgaaagtgggtgattgattcttcgatcctctctatgtctaagtctatgac
agccctgagcttttgccttgtagtaccagggaagaagtccctgtcgctactcctgctgtg
cccagtccaagtaagagagacactgtcaaggcagtgatgggttcttgtttggtacaatag
tacccatcccatctatctaacagttcttcatacggatagtaaaccagcctgggcaccaac
tgaactaatatacaaaaatctctagatatacttaggacacgggggtgtacagaggggatg
agtgagcccagctgagcaaagggacccttgggaggaggggacattgcccaggcagattcc
catgccagtcactgcctgtagggtgatccctacacccaacttctgggcccatcagcagga
agaggacttgttagacaggctaatattgggggagacaaaggcagtcccttcataatatag
gggagctatatcatagcagagccagcaagaacaagtcactttggacctggattcactgag
tactgggaaggtcttactgataagctcagtcagtggggccaattctgagagaaaagggag
ggttattcctggatattggggatcatgacagtagttaaccgtacctgggttagtgctggg
ggcttgggcatggtagcttatggcagacactcataacctacttactggttaccatagggt
tagtagaggtttctatcttgagtttgatgggaaaaaaaaaaatttatcatcatatccttc
ctggtatagtctgaggccccatgtcacctatccttggcctctttccctttctgagtaaac
tgcacagtgattgggttgcaagaaaacttgaggcattgatcctctccagcccacattcct
gagggctgttggcttccccaggagacttctggatgtgctcctgaatgaatgttctccaat
gacttgtgatatcccccacaattgctactcatgagtccccttccttcagaggatctgctc
actgggattaaatcccggcttgagctcagattccagtaggtatcacccaagctctcacag
ccccaagcagcacagtagaaattttctgggcccctgcactaataagctaaggacctggat
ctctcatctcgtgggcatacatgaattgggacctcacataggtggtctcttacttggggg
tgtccgcatcctatgctccttcctcccagcccttttcctgggcatggcattagtgaacat
gatgctttcctatgacattctggcaagaccctccccactttaccttttgatttggaattt
cccaggtgtccaatctggctgccaggtcacacagatcaaaagttagagggggccaccaag
taaaagggagtggtcttgggttaccctggccacctcattgcccgttagggttgatgatat
attccaggtcagtttggtgggctgatgtgggctagattcagcactcagctccttatacca
tatcagaatcagaaaccccataagggtcaggaaattcttcatccttggtggcctaccaaa
tgaccttgagctttaaagtgttgcttgtcttcttcacgctccaaggtgggtggtctccag
ggggtggacaggtcactggtttcatgtgaggagcatgtatccaggcaactatgctatcta
ctttgtctatctgatgtcagcgaacacggacactgtcactgatctggaaccaatgtggca
cctcagtcattcctggaacataaatggcagacaactgggaccatatttctctctgaactg
cctcaagggacgccagtcttttgacaaggtcttgatctccttcttgggagatctctatta
taggcccagtggccaccaatggagctgggcctccatagtggatcttgaaaggtgttaggt
tgaaatgatagggggtgctctggcctgggaacaagaccaagggaaggagtaccacctagt
ctctgccagtttctaaggtcagtttagtcaaggtctcttttaaggttctatttatccttt
ctacctggcctgaactcggggaacagtatacacaatgaagtttccaatctgtcccaaata
cttttgccaacccctggcttaactgagagatgaaggtgagtccattatcacaccaattac
cttgggtatcccaaacctgggaaaaatctcttctagggtcttcttggccatgactgaagc
catctcctgtttcatgggaaaagcctctacccatcctgaaaaagtacctacaaaggctag
tgactatttataaccatattttccaggcttaacctctgtaaaatctacctcccagaagac
tcctggtttatttcctctaggtctcttccctgtacctatcttggtatggcaggcattact
tgttgacagactttgcagctctctgatatttcctctaccaggtattttaggtccatgatg
aacatcctggatcccttaatggcttctatcagctttctgctgcctagtgagtccatttat
gtatctgtcatagcaagtctccggcctggtcccaagggaggatgacttttccctcttggg
ttttccattgatcttcactcttgagatagtagttggtagggtagctagagatctgggcct
cctcctccttagtgtagactaggtggggccgggcactgccccaatgaggccattctttaa
cttctccgctggttggtttgttaagctttttccattgtatcagcacaggtacaaggtctt
taaaggctatctccttggctgctttatcagctaggttgttccctacagctatatggctct
cccccttattgtggcagggacagtggataatgctcaccttggttggccttaggagggtgt
ttaggagggccttgatttcagcctgtttgtttgtttgtttgtttgtttgtttgttttgag
acagggtttctctgtgcagccctggctgtcctggaactcactttgtagaccatgctggcc
tcaaactcaaaaatctgcctgcctttgccttccaagtgctgagattaatggcgtgtgcca
ccacctcccaggcctcagccttattcttaccttctcttccatttgatgttaaaagtccca
tctgttggtaaattgccccttgtacatgtgagggggcaaaggcatacctgctgtcagtgt
agatgttgatctttttgcctgcccccaagtccagggctttggtcagagctattagctctg
ccttttgagctgacattcccggagaaagtggttctgcccagaccacctggcacccatcca
caatggcggccctcaccttgttgtccctctactaggtggctgctgcaatcagtgaaccag
atcacctctgcattggggagcagctgatccgataggtcctttcaccatccttggtcctca
gaatcctgttggcaatcatgagctggtgggtcaatgtctggttcaggaagcagagcggcc
gcattgaggaccactgatgacatgaaggccacctcatctgagtttagcaacagagtctga
taattagtcatgccggtgttagtcagccatcaatctgggggcttgtgaccaatgctctcc
atggcatggggagctgtcatggtcaggttttgccccagagtcaatttatcaacatcttta
actagaaccgccaccacccagcagcgacagagtctaatttctttgacaggcaactgggca
cttccagggcccccagctgctgagtgggctatccccctgttctctgccacataaaggtag
aaaggtctgctagcatcaggcagtcctagagcaggggcctcaagcaaagcctacctaatc
gtgtcaatagcctgttgctcttcttcctcccaatggaaagactgtccatttttagtcaga
aggtagaaggaggcagccaattcagcaaaccctggaatccatagccggcagagcccaaac
atgcccaggacttctagtacctgcttggggctctgaggaggagggatgtgcaggatggtc
tctttttgagcattggggagccagcgccggccatctttcagcaggtagcccaaataactt
tttatggcagatttgggcctttttggctgaggctctgtatcccaatcctcccagttcctc
taagaggcatttagtcccttctagacagtcctccttggtctcagccacaatcaaaaggcc
atctacatactgggcaagggttacttatggattggactcacggtagattgtaaggtccca
gtgtagggcctcgtcaaagagggtcgggtgagttcttgaatcctggggcagcctggtcca
tgtgagttgcccattcaccccctgctcaggatccttccactcgaatgcaaagtagtcctg
actttggggagtcaatgttaggcagaagaagaaatccttgaggtccaggatggtgtacca
agtcctagagggtggcaaggagctcaatagggtatatgggttaggttcagtaaggtgtat
atcagcaactcactggtttacctcccataggtcttgtactgggcaatagtcttgggtccc
ggttttcttcacaggctggaggagaatattccaagttgactggcacttctgcaaaatccc
ttattctagaagcctggtaatgtgggtcctaattctgtcttgggcctccctcgacattgg
atattagcgcacagacactggggaggcttgggctctgaactccacatggatgcgggggct
ggttgttggccttcctcatctcagcccaggcctggggaaaggccttgagccaccagtcta
aatcatggggtgcccggtccaaggtctcaaacaacttgtactcattctccagcctggagt
caggacttggagtggttctccctggggacctttaacttgggacccctctaggaggaaatg
gatctgggctcccattctggtgaacaggtcccggccaaggaggggggtagaggcaatctg
ggatagccatgaaagagtgaaatacccagtcctgcccagatcaactgatcttcagttagt
ccatgaatattgtttggtcccagtggcaccttgtacccatgatgcctttttggacatggg
cccatgtgtttggaataatactgaatgttgtaccccagtgtctaccagaaactgaataga
cttcccctccatctttagagttaccctgggtttggggacaggttccgaaccccatgcccc
ttaattgctttcttcgcctagggctaatatcttctgaatctgggggcacttttcccagtc
ttggggcttttccccctGCTTCTTTTTGTTGGGACATTC
Primer
(+)CCCTGAGTGGTCAAGGTAAAAG
(+)gaatgtcccaacaaaaagaagc


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