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Human element [ hs1972 ]


Position: chr6:21,586,846-21,589,522 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LINC00581 - SOX4

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gttaTTTTTGAATCGTGATAGCCAGAtaaagtgtcactaaattatttttttaacttggaa
tgtgggacaggaaggatggagtttcatgcttcaggaagcagtgaaaaatcacaaaacctc
tgtactgctagacccaacacttttccagatccccaaactatctctatcaccctcctttca
tggcaaatttgcatatgcattattgtcagaattttgaacttattttacaaccatatacac
agaattcttttctagcttgctgcttaactgaacagatggtgcagtttcccagcccagcag
ctggaggggaccgaggatgcgctcggcacacagtaggagcaccataaacgttgattgact
gagttcattgaggcggttgacgccaggccatccactcccacgcggtactcttatctttct
ccaggcccacacccctggcccgagaggcggtagctgggagcagatggcgagtcccgggtg
ccaggtgtactgcactccaggcgcggtctggggcactgggttctacggtccctgccccac
ccctcccatccctatgagttcccccaaagctgtctgcgccaagtgtgacgtctgactacg
gcgggaacatgggaggggaagggctggaagaaaggagatcggttgcctggcgagggggcc
cgtgcgtcctacagtcgctacccgccacgcacgcgtccctctcctcctgacccgcgtcac
ttagcagccaatgcggtctccgtgccttcccacttccccgcaatcaagcgcctttcttcc
tccgcctcccctctttctgttatctgacattttgctctgcttccctctgcccactcccca
gcgggattccctccctggcagacgcgcgcgccccagcccgccctcgcacaacctccaata
gcaggtcaactggcttgtaacgctggcttagggttgctcttgaagtgtttttccaaaagc
gaaatcacccgctttcccccacggggctaaaactgtaattgcaacaacgggctgttgcgt
tgggggtgggaagcccgtcgggcgtgccccacctagaccgcctgctggggccactggggt
ggttttgccgccccctcaacccctgccaccccgggtcgagtaggcagctccacccggacg
cttgcgccagggcctgactgccgcggctgccagcggaaaggcagagaccagctgatccaa
ggaggacaaagcgagccgagaccttccgcagagcttggcttcctcgtaactgcgcccagg
gcgcagcctctccctgttaactacctgccatatgttcccttctctcagacccgaaaccgc
ctcctacaggtgctggggactgaatctggagcttcgggcgcggcccttgacaagggcgcc
tggcaccctggggcgcctccgtggccctcgcaaactcagagagcccccaccgtccagtct
ttcctgcacgagcgagggatcgagggaaggcgccaatgcacgtctgtccctccgtgatcc
gcgcagaagggacgcttgaagactggggtgcaatgaattgtcgacttccctcagctctca
gcccttttcctccccccgcgcgccgtgcacgcgcagcctgctctgcccttctgaaagaga
cgctgcagctgcgctctcaatggggcctcagcctgcggggtccggggaggggatgaagtg
ggtggttgcccagccggtgtacgaaggtcgtgtgcctgccgaagagtgggtcccacacgc
acagcgcgcgccgtaccaaccaagcaaggctcacagagagcatttagtcgtccagagcaa
aggatgctgggcactcaagagagcagggggccaagtggctgtcagttctggtcagtgacg
gaactggacagcatctccaagggccaggggatggggtaggaggacggaggagccaagctc
ctgggaaacgacccccccaacctatccgcgaccggttgcaaattcaaaggagggctggga
gcccgcgagggtgcgggaggtgtcctcgcttgggctgcgtctgcgcccgcgtttgtgtgt
gtgtgcgcgcgcgtgtcttcagctccttccccggtcgtaaaacctaaacggaagacgggt
gttaaaatgctgctgacaggatcgcctgaaacatgtttacagtaggaaggactttcctcc
agaaagcacagtctgagtcgattccaatttatttcctccctgtaactgtaagcgaaagga
gaggttcggctgccgcggcggagcgaggctgagcaccattaatccttggcgagcttaagc
cagggagagcgccgtgcctgcgagaccgagtcgctgcgctccggaaggcgttctgcctga
aggaaacctctttttttttttttttttttttttttttttttgagtagggagtggcctttg
cactggagtccttaagtaaggcgcgtcgtttctctgcagccgctctcggaagccggagaa
actgcattcactttagcaagaagacagggaaactgaaattgataatcccccgagttgggt
tacctgatccagacaggaagctggtctaggcttcccccgtcacccggagctcctgacaag
tgagcaggaggcggcgggtggttgccctaaactttgatttatgaaaaaaaatcagaattc
atcgacataccctgttaCTCGTTGAGCGTTTAAGCCT
Primer
(+)caccTTTTTGAATCGTGATAGCCAGA
(+)AGGCTTAAACGCTCAACGAG


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