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Mouse element [ mm1971 ]


Position: chr13:15,473,839-15,479,189 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTGCTGTTAGCAAGGCTGTTAactaaaaatatacccacatcgaccgagagtgatacaca
aatcaaaagatgtgcagatcacaatgaagaaacacaggaatgtgagaaaactgagcaaca
gaactcctccaacaaactgcactcaaaaacactgaggccaagtgccgcagtctctgacct
gcggagacaagaacaacacggacaccaagacaggttctctagcagcttctgcagcttctg
cagcttccgcagcttccttctttacttgcagctcttctacttacagctttattattatta
ttattattattattattattattattacgtattttcctcaattacatttccaatgctatc
ccaaaagtcccccataccctcccccccatgcatatgtatgtatgcatatgtatgtatgca
tacatacatatatacatatatatgcatgtttaaattaattaggagatagatttatatgtg
ccttgctcataagctcatttgcttctgtttgattccacccctcttacctttttgtcagta
tcgctaatcaaggaaccttataagttgctgaagaatggaaatttctatatatggacaaag
cataaacaactgttaacatgttgtctaagaactcttgtatccaatcaatagaccaaaggc
aagactacacaggattaaaggaggtaagataaaaagtaaactaaagcctcatccactgga
gcaatagtggtctgatacttataggttaattatccgcattttggctggtggtgaggcctg
tttcgcctgtttcacaaaaagttttatgccttgcactataaacctggaagaaaagctcat
atctagggaaatcatagacccaagtataggccaggatccacaaatgagggagaacatatg
agctttcttgctggcttgtttcctttctttctgagttttgagtgacttcagttaatactg
tacattctcagtctgtcgatttttcttaaaatttctaacggaataatattccattttgta
taggtacctaccacatttttattatctattcatctgttgatggggatctaatttgtttct
gtttccttgctacattataaatagagcagcaataaataagattgtgcagatattgccttg
gtgggatatggagttctctgggtatatgccccggagtaagtacatgagtcatatggcagt
tctctgcttttttgaggaaactttaaactgatgtccatgattgtaatcatttccactcac
acaggcaggaaatgagaatgtacctttccctgtatcctctccaacagttattgtcacatt
ttttgataatagacattcttcccaaaataaggcgatatttcatagtcattttaattttca
tttccattatgattagaaaaaatgaacacttttttaaaaagttattgattatttggggtt
tgctcttggaaactatctgtttaatgcattatcctatttgttgattgaaatttttatttc
cttgccatctaatttcttccatttcttatatattctggatattagccttaacacgaagta
taagaggtaaggattttctcccattctgtggactgtctgctcttgtgataaattcctttg
ttgtgcatatacattctaacttttatgtaatcccatctgttgtcattaggatctagtctg
cctggctgcatacctgccttactgcataatggggtcctcagtctgtgttttcccagagtg
ggaaacattggaatctgggacaatggctgctgttcccagttcccattgtacccaggcact
gctggcttactgctgggaggcagaatgaggggtctctggactatgcttcccctaagggca
cccacacaccaggcagaaaggagaaggcagaatctatcatgggggtggaacctggtttga
ttccgaatgagtgccaagagtacagaggagctggaagagagaagaccttctctgggaaat
ttaagcaaacctctttatgatgaagtccccctaccccaccccacccccaccctcaggtga
tccttgatgaaaagacagtccttgcttgttcaactgttttatttgatggcaatgtgaatg
tatataccttactcagggtgaaccagggatgaaatatcttttgcaaaaaggaatgcccag
gaagggaagctcattggctgaatctttgggacctagctagataacttaatagcatggaga
actccaggtttttatgctacatgactgccatggttgacactgagttgttgtagttatatg
ttccagagctggtagaggtaggcagggagtggctccactcctaccattctaagttctgag
attccccgggttatgactcactcagccttctatgtgtgtcacagtccacttgaaccacac
tagtcctgggcttttggagttttgttcagaaagttcttgcctaacccagtgtctaaaaga
gtaatttctatatttacatctattagctctagtatttcaggttttaaaccaaatttcgtc
aagttgattttctttgtacaagataaaagatatgaacctaatttcatcttttgtaaatag
atatctagttttccagcattactttttgaaaataatttttactgtgtttttacctagttt
gtcaaaatttagtttctaaatcaagaaacccttcaaatatcctaactccagttccctaaa
tctcagaactctgcccttcaaaaaaagcaccaaggtagtttacctcctctagaagccagc
aacccttctgctataggcctgagaaaagcaatttagttaaaatacaagacaaggaccaaa
atagcaatcatgaatatgttcaaagaccttaacatgggtattaataaatattttaagaga
gaacattaaatgaaaaaaattgaatgaaataatgaaaacaagtcaagctgtaaaagtaga
atttaaacaacaacaacaaaatagaatcactaaagaaatggaaaactgaaataaaattgg
acatgaaaaactcaagattacaaacaaaatactcagagataaccctcaccaagaaattat
ataatgtagaagaaagaatttcagatcttgaagacaaggtagaagagataggtaactctg
ggaacgaaaatattagatctaaaaatgtctaggcatttcagaaatctgaagcatccatga
agtctgggaaaccatgaaataactaaatttatgaataatgagtatagaggaatgtgggaa
gccacatgtgccgttgaagagtggcactgactactgctggccaccacgcataagattgga
caaacaaccaatgtgtacatatgcagtaaagttttttgcaaagacactgcctggcccagg
catgataatgaggttctgtaaggtactgagagtataaccaatcagatgtgagacatgcaa
atgaggtatgataatgaggttctgtaaggtactgagagagagtagccaatcagatgagga
acatgcaaatgaggcttagtgcataaccaatccgggtgtgagacacgcccctcctaggcc
tataaaagcagcaccagttctgggctcgaagtcttttcgcctctacaatcaagctctccc
aataaacgtgtgcagaaggatcctgttgcagcgtcgttcttcctggccagtcgagcgcac
gcaagagaggaaggagaagaaacttaagtcataggaacagatttataatgaaatcagaaa
aaaatcccaatctaaagaatgacatgcctaactaggtgcatacagaacaccaaacatgca
ggaccatgaaaggaattttctggaacccataataatcaaaacactacatttatagaacaa
agaaatgatataaccaagtcacatagtagcaggcccattatactaacagctgactttttt
aaaaagtggcctctgaaaagtcagaagggcctgaacaagatctgagagaccatagatact
atcccaaactgttatacccagcaaaactatcaatcgaaatccacagaaaaagttgaacat
tacacaataaaaccaaatttgaacaatttctgtctatcaatctcattctacccaaggctc
caaaaagaaacctgaaagagtctatccatacccaagaggatacaaattataaataattaa
gtaacagtaaatcaaaatgtaagggatacatatatcacctcaacaaaataatagaaatca
atagcactgctccttaatgactctcaatattaatgacctcaataaaaagacatagactga
gctgggcgtggtggctcatgcctttgatcccagcactcgggaggcagaggcaggcggatt
tctgagtttgaggccagcctggtctacaaagtgagttccaggacagccagggctatacag
agaaaccctgtctcaaaaaacaaaaacaaaaacaaacaacatagactaacaaattggatt
agaaaactagattcatctttctgctgcctccaagaaatccaccaagaatagacaatacct
tacaacaatggttctcaaccttgcaaatgctgtgaccccttaatacatttcttcatattg
tcctgatccctaaccataaattatttttgatgctatttcataactgtaaatttgctactg
ctatgaactgtaatgtaaatatctgtgtttttgaatggttctttctagggtaaaaggatg
aaaaagttctaccaagcaaatgataccaagaagcaagcaggtgtagccgtttcaatatcc
aacaaaacaaacatcaaaccaaaaccagtcagaatagagaggggatgacactacataatt
attagaagaaaaattaataataaactgaaataataaactcaccaataaaataatccaagc
tggatagtcagattaaaaaaagtagtttcttctacatgttgtcttcaagaaatatcactg
gtaaagatacccactggctgagggccatgtggtagcataaaatttataaagcaaatataa
gctaaaaaccacctgacatagctattttgaatgcaattcagtaaaccacaaattaaaatt
atgcagaagagaaatggctaatctctacatttaattaataagacaaatcattgaaaatat
ataataattataaatatgtactaaatgttgggattctcaagttcataaagacaactgtaa
tggatgtaaaaaatcaagtaagttctggctataaataaaaaacagctatacaccaatttc
ctttgtgaacataggtgcaaaacttctcattaaaattcttgcaaaccaaattcaaaatta
catttttaagattacacaccatagtcaagctgattttgttctaggaatgTAAGGATGATT
CACCACACCAA
Primer
(+)TTTGCTGTTAGCAAGGCTGTTA
(+)ttggtgtggtgaatcatcctta


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