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Mouse element [ mm1970 ]


Position: chr13:15,389,275-15,394,703 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAAGCAGACGTTCAAAGAAGAActaatatcaataatcctcaagttacttcaaacaaaaat
ggaaacaaaaggaacatatcaaattattttttacaaagccactattaccaaaaccacaaa
aagattcaaccaaaagatgaaaattatatatcaatatcccttatgaacatagatgtaaag
agtcacaataaaatacttggtacctgaattcaagaacacatcaaaaatattatccaccat
gatcacattggcttcacccagatatgtaaagatggctcaaagttcataaatcaatagata
taattcaaaatataaatataataaaggtcaaaatggcatgatgcaatccaactatacttt
catgataaaaattctggaaaaactttaaacacaaatgatgcatctcaacataatgaagac
aatttatgtcaagtccacaaccaacatcattttaaaagaggagattctcaaagcattttc
attaaaattaggaacaagacaaatgtctacttccttcataggttttggattcctagctta
aagtctcagctagagctataagacagctgaaggaggtcaaggaaatacagataggaaagt
aagaagtcaaagtaatcttatttttagatggtattattttataaataaaaaaacccaaaa
gattataccaggaaacttatacagatgatcatacttttagcaaagtagcaacacacaaga
tgtacacacaaaagtgagtagcttttcgtatatacaaattacaaacatactgagaagaaa
accagggagtctgtacttttataatagcctcaaaaatatatcttggagtaacactaacta
cacaaaggaaagacatatggaataaaaactttaaaacactaaagaaaaactaaagaaata
attgcccaataaaatacatgtgatcataagaagaaatgagattgaagggaaaataaatga
attcagaagaacatcaagttaatgaaacagatgatgtcatatttgaacacattctgtgcc
tttttgttttgtcctatgttcatctctaagataaacagggtcctgttgcttgcccagaaa
ccacagtactgggcaagatgacggttcacactgtacaaagcaacccaactgtcagtaata
gtgacaaagttagaaacactgttcctctggatccaggcccacaatttctgactcttgctt
cctgctttaactgatgtgatttccagaaatggaaaaattcccagtcatgaggccacagcc
atgaacagaggccagctttcattactgttggagtcagttctaatgttcatgctgcgttta
cccttgagccagtaataaagatggagctgtggtcttgggttgggtgtgtgaagtaggatg
ctaagtggtgtcttatattatacattagactataaatcaagacatctgggagcagcaggg
gtcccaaaatctatacagtcctcagagaagaaagaacatttaagataatcccttacagaa
gagaaaaacattaaatacattgaacacaattaatgtttgttttgacttacttgatgtctt
gtgaattttgtactggggactaagaatcacgtgtaaccatgtagaggacagacacataaa
ccctcatgcaaaagttatgtaactatgagcattttgacaatgtcattttatatctcatcc
acatgctttcgtggaagataattagagtatttttaacaatctcatatttataacatgttc
caataaaacatgcactagtgaaagaaccacatttcagtaacattatttggtaaaatcaaa
catttcctagcatcacctgataagtttaggttttttgtgctcttgattatactaaaaata
ttacatggatagtttattgaaatcaaacctcagtaagttcaacatatttagtttatgaat
ctctaaggtttcctttagtttctattattgttctctccctcattttctcttatacaatct
attaaatgcatttcctaaaataatcaggtgatgagttctactacccttccaagttggctg
gttctgactctcgggtatcgtttaacatagtcttgaacttcctgtatttactctaaggtg
ataatcagagggagctttattagatttcatcttaccttttgccattaatatataatgagc
atcccttctaagcaatgctacacagtgggagtaaggcaaaagatagcaactaaaccacat
tgctatcaatcattataaaagtccccatggatatacatttgatggctttagcatgcaaca
tttattattttctaaatccagtttctcattggggttgtaaaactcctatctaattctctc
attccttctgcgtttagtaggtggaattctgaaatacatgtcactttgaaataaacttca
tgctctacctaaaatggttccatttctttattagcccttttcccataataataacatgat
agaagtttctaaaagagtacagtgttgttagacatcacgtagctttgcataatgaagata
tttcaagatgtccatcattatttcacatactaaaatgatcccacatttagcaggaacatc
tatacagactaatgtgactattgatgtcttctcatagtgatccagacctctgtcctgtat
tctagatggacactttcaacactagagtctaatctgaaagaggtgattaccccaggagtc
cttggtaacccttgtatgagaaacagtattttgtgaatactatctagatagatcctcaca
ttgtatcttaaaataaaacaaagcaaaacaaaactggttgtttctagactatcttggaaa
tttatgctgatcttacctaaaattgtctattaaaacacaaatatgtagaaagaaatggct
tcacacatcctcgccagcatctactgtcacctgaattttcgatctggcaaatacagaagt
agatgctcacagtcatctattgggtggaacacagagcccctaatggaagagctagagaaa
gtatccaaggagttgaaaaggtctgcaaccctataggtggaacaacaatatgaactaacc
agtaccctcagagctcctgtctctagctgcatgtgtagcaaaagatggcctagtcagcca
tcactgggaagagaggccccttggtcttgcaaacgttatataccccagtagaggggaatg
ccagggccaagaagtgggagtgggtgggtaggggagcagggctgggggcagggtagaggg
gacttttgaaatagcatttgaaatgtaaatgaagaaaatatctaataaaatttgaaaaaa
aaaaagaaatggctttgtggaaacaatataaaccttgatcctcttgtaatgttattccta
aaaagaagtcaaaactgttgaacacttgacaatagaaaacagaagtcaatgaactgctgc
tttacagcatataaaaaaactgccttgttatgaaaaactgacaaaattgtataattagcc
acaaatgcacagctggaagagaagggggcatgagccagagtgaacagcagttatatatga
ggatactacaggaccaggctctactggacctaacttgaggactccctctccttcatcagc
ccttcatttccaagcatgtgccattccctgaggagtggattacagactgaccttgaaggt
gctggcaaagctccttttccttctttcttttggcagtgtagcttgatacactgtttgtat
ggaaaacatagatgtcacttaaatttatctctttttggtttttgttttttcagttttata
tagttaaacttttcctacaataagaaaggttttcatgggtgacttaggcagaaaagaaaa
cataaatttgggtcatatgtagctgccagattaaatattaaaattatttaagttataaat
tctttgaaaccatgattactcctcaagaaatcctttgcaaaataagagaatagaagagaa
agtgcttttaatattatcttcccttttgtcttcaattctccaagtctttgttctgaaggc
agcacactgtctcacttccctgaagctactgataaaactatgcaagaacatcagagaaaa
aaatgaagccaagataggtgctctccccaagggaatggagtacttctttgttttaaattt
tcattggaaatctaaagattttgcatgcaaacatcttatttcatggcactgcttcacaaa
ttgagagattaaatctagctccacataaaggtttttcaataaagtaggttgcaggctcct
gcttatggaaaattgatgcctcatctgatatgctttcaattgctaacttttgtttcacaa
agctgggaggaatttcaaccaaccattatctaatcatgaaaatatttcctacctatcttg
tcttcaacatagcttgctgccaaatgtagttttgactattgtaaatcactatgcatttta
acaagcaaaacagagtctcgttttgctcaaaaaaagtgaatattgtagaaactatccatc
attatcagtggaatgcctccaatactatgcctgctaaagaattgttgtgacataatttaa
tatgttctttagactcctttattgaagtcgaatttttacaatcttgaaatacaaagagct
attagaataattccattaagtctccctctgtttagactcaattctcactacgaggtaaag
catgcactttggatatttagttaaccataaaatttcacagtgacatggaccataagtatt
cctcctgagttcagcataatataaaacaggaaaagcaaattaaacagaagttggtttctg
tggatttcaaatattatttcaatctatccacccacaaatttttgcaggcacatagtatgc
ttgtgaaaacaccttaacctacaattgggttaaaaaagacagcaatgtatattaacaaag
tgggaactattcagagaaagattttcaaagacacattcttgagccttctggaatacatgt
ttgagggatcagggagtcggcaagtgaatgctggacctccaaagcctgggttcactgacc
ttggctgtgtcacctcacatgagataccatctcctttggctgacattcttggaaaataga
aaatatcttattcaaaggtctaaataagtaaatcgttgtttggaataatctctggcatat
gaaaaataataatacatgatgtcaatttttatttataaggatattttattaaactattag
ctgctacctatactttcattcattctttcaacaaacatacacttgtgtttgcaatggagg
aatgcctttagcataagggattacagtgacacagaaagaaatgtcaatggaacaacacaa
ccccagatactctctccaccagtagatgcttcagagaactggaaaaccagaaagataaaa
atatttaCTACTTCCTTCAACCTCCATGG
Primer
(+)CAAGCAGACGTTCAAAGAAGAA
(+)CCATGGAGGTTGAAGGAAGTAG


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